Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC139713.2-212ENST00000506982 832 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 AC090071.1-201ENST00000507713 644 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC093668.1-201ENST00000514917 911 ntAPPRIS P1 TSL 3 BASIC6.4□□□□□ -1.38
RNF4P78317 OR6C7P-201ENST00000547875 934 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC089984.3-201ENST00000552838 363 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC6.4□□□□□ -1.38
RNF4P78317 AP005205.1-201ENST00000563503 508 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC6.4□□□□□ -1.38
RNF4P78317 MIR378C-201ENST00000578683 81 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC6.4□□□□□ -1.38
RNF4P78317 MIR4312-201ENST00000579909 76 ntBASIC6.4□□□□□ -1.38
RNF4P78317 RN7SL32P-201ENST00000580514 281 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC090616.1-201ENST00000583895 447 ntBASIC6.4□□□□□ -1.38
RNF4P78317 PPIAL4C-201ENST00000585245 600 ntAPPRIS P1 BASIC6.4□□□□□ -1.38
RNF4P78317 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC6.4□□□□□ -1.38
RNF4P78317 AC018690.1-201ENST00000608144 626 ntBASIC6.4□□□□□ -1.38
RNF4P78317 AC004948.1-201ENST00000609858 672 ntBASIC6.4□□□□□ -1.38
RNF4P78317 TSPAN6-205ENST00000614008 900 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC6.4□□□□□ -1.38
RNF4P78317 AC095031.1-201ENST00000623685 672 ntBASIC6.4□□□□□ -1.38
RNF4P78317 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 MIR548A1HG-202ENST00000637804 784 ntTSL 5 BASIC6.4□□□□□ -1.38
RNF4P78317 ZNF14-201ENST00000344099 2949 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
RNF4P78317 ATP1A1-203ENST00000369496 3572 ntTSL 2 BASIC6.4□□□□□ -1.39
RNF4P78317 ZHX3-205ENST00000432768 3551 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
RNF4P78317 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 ZNF699-201ENST00000308650 2094 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 LRRC37B-220ENST00000584368 2773 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.4□□□□□ -1.39
RNF4P78317 AL512329.1-201ENST00000404600 1592 ntBASIC6.4□□□□□ -1.39
RNF4P78317 DLEU2L-201ENST00000371086 3555 ntBASIC6.39□□□□□ -1.39
RNF4P78317 CD209-203ENST00000315599 4283 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 LYSMD3-201ENST00000315948 4259 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 AADACL3-201ENST00000359318 3662 ntAPPRIS P1 TSL 3 BASIC6.39□□□□□ -1.39
RNF4P78317 CR848007.1-201ENST00000442354 1699 ntBASIC6.39□□□□□ -1.39
RNF4P78317 NSRP1P1-201ENST00000444067 1693 ntBASIC6.39□□□□□ -1.39
RNF4P78317 SETDB1-201ENST00000271640 4437 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 ZNF652-201ENST00000362063 5988 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 AC009220.2-201ENST00000489759 1751 ntBASIC6.39□□□□□ -1.39
RNF4P78317 IL1R1-204ENST00000409929 1858 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 LINC01085-201ENST00000502759 1984 ntTSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 ZBED3-AS1-216ENST00000515356 1987 ntTSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 IKZF3-215ENST00000535189 1996 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 LALBA-201ENST00000301046 728 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 RNA5SP152-201ENST00000365184 110 ntBASIC6.39□□□□□ -1.39
RNF4P78317 S100A7L2-201ENST00000368725 339 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 PRR9-201ENST00000368744 1229 ntAPPRIS P1 TSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.39□□□□□ -1.39
RNF4P78317 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 AL512430.2-201ENST00000406786 339 ntBASIC6.39□□□□□ -1.39
RNF4P78317 ERMN-202ENST00000409216 746 ntTSL 4 BASIC6.39□□□□□ -1.39
RNF4P78317 RN7SKP33-201ENST00000410942 340 ntBASIC6.39□□□□□ -1.39
RNF4P78317 CBX1P3-201ENST00000413296 527 ntBASIC6.39□□□□□ -1.39
RNF4P78317 XIST-201ENST00000416330 750 ntTSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 RPL18AP14-201ENST00000417685 526 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AL513325.1-201ENST00000417716 1034 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AL645937.4-201ENST00000419702 389 ntTSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 GRK5-IT1-201ENST00000421206 400 ntTSL 3 BASIC6.39□□□□□ -1.39
RNF4P78317 AL672212.1-201ENST00000422246 400 ntBASIC6.39□□□□□ -1.39
RNF4P78317 MTCO1P54-201ENST00000430139 712 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC6.39□□□□□ -1.39
RNF4P78317 RPL3P11-201ENST00000434028 1146 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 OR13K1P-201ENST00000444577 975 ntBASIC6.39□□□□□ -1.39
RNF4P78317 HCG17-214ENST00000453558 732 ntTSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 AC008080.2-201ENST00000455149 577 ntTSL 4 BASIC6.39□□□□□ -1.39
RNF4P78317 RPL5P24-201ENST00000463742 885 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC126182.1-201ENST00000478134 357 ntBASIC6.39□□□□□ -1.39
RNF4P78317 GAPDHP39-201ENST00000481866 979 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC073522.1-201ENST00000483312 377 ntBASIC6.39□□□□□ -1.39
RNF4P78317 DYNLL1P6-201ENST00000503440 264 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC116353.2-201ENST00000505332 712 ntBASIC6.39□□□□□ -1.39
RNF4P78317 RNA5SP278-201ENST00000517055 102 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC087808.1-201ENST00000520501 361 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC6.39□□□□□ -1.39
RNF4P78317 AL356215.1-201ENST00000528366 1102 ntTSL 2 BASIC6.39□□□□□ -1.39
RNF4P78317 NPIPB14P-203ENST00000532298 987 ntBASIC6.39□□□□□ -1.39
RNF4P78317 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 AHI1-217ENST00000534469 680 ntTSL 3 BASIC6.39□□□□□ -1.39
RNF4P78317 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.39□□□□□ -1.39
RNF4P78317 AC074029.1-201ENST00000552531 1044 ntBASIC6.39□□□□□ -1.39
RNF4P78317 RNASE9-205ENST00000553706 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.39□□□□□ -1.39
RNF4P78317 PPIAP6-201ENST00000557078 499 ntBASIC6.39□□□□□ -1.39
RNF4P78317 DPPA3P2-202ENST00000557188 1219 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC010287.1-201ENST00000566916 357 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC130371.1-204ENST00000576197 401 ntTSL 3 BASIC6.39□□□□□ -1.39
RNF4P78317 MIR744-201ENST00000578242 98 ntBASIC6.39□□□□□ -1.39
RNF4P78317 MIR548S-201ENST00000581352 82 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC087575.1-201ENST00000585087 229 ntBASIC6.39□□□□□ -1.39
RNF4P78317 AC020914.7-201ENST00000594477 545 ntBASIC6.39□□□□□ -1.39
RNF4P78317 LINC01081-201ENST00000597373 465 ntTSL 5 BASIC6.39□□□□□ -1.39
RNF4P78317 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC6.39□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 68.4 ms