Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC007490.1-201ENST00000624321 703 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AC019080.5-201ENST00000624891 757 ntBASIC5.93□□□□□ -1.46
MSX2P35548 AL392088.2-201ENST00000637607 285 ntBASIC5.93□□□□□ -1.46
MSX2P35548 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 LINC02225-201ENST00000510444 4069 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC5.93□□□□□ -1.46
MSX2P35548 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.93□□□□□ -1.46
MSX2P35548 HSPD1P11-201ENST00000508643 1702 ntBASIC5.93□□□□□ -1.46
MSX2P35548 WDR95P-201ENST00000425638 1542 ntBASIC5.93□□□□□ -1.46
MSX2P35548 ELMO1-207ENST00000442504 3154 ntAPPRIS P1 TSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 AC126474.2-201ENST00000623268 1750 ntBASIC5.93□□□□□ -1.46
MSX2P35548 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
MSX2P35548 MS4A7-211ENST00000534016 1378 ntTSL 2 BASIC5.93□□□□□ -1.46
MSX2P35548 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 PYGO1-202ENST00000563719 2653 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 ADGRF1-203ENST00000371253 5468 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 AL353743.3-201ENST00000442109 1468 ntBASIC5.92□□□□□ -1.46
MSX2P35548 OR4S2-201ENST00000312422 936 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSX2P35548 OR4F17-201ENST00000318050 1054 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSX2P35548 OR4F5-201ENST00000335137 1054 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSX2P35548 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 BPIFC-202ENST00000397450 458 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 RPL12P23-201ENST00000405880 490 ntBASIC5.92□□□□□ -1.46
MSX2P35548 ATF1P1-201ENST00000406040 927 ntBASIC5.92□□□□□ -1.46
MSX2P35548 LINC01687-203ENST00000420255 897 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 MTND4P20-201ENST00000424125 869 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL157884.1-201ENST00000424561 454 ntBASIC5.92□□□□□ -1.46
MSX2P35548 NMNAT1P2-201ENST00000435192 860 ntBASIC5.92□□□□□ -1.46
MSX2P35548 RPS3AP38-201ENST00000435889 763 ntBASIC5.92□□□□□ -1.46
MSX2P35548 ATP6V1G1P4-201ENST00000438388 335 ntBASIC5.92□□□□□ -1.46
MSX2P35548 RPS27P5-201ENST00000444247 244 ntBASIC5.92□□□□□ -1.46
MSX2P35548 TPTE2P6-202ENST00000445572 1007 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL360221.1-201ENST00000445989 335 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC068135.1-201ENST00000446164 246 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL096803.2-201ENST00000450032 677 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX2P35548 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX2P35548 AL133477.1-201ENST00000457472 514 ntBASIC5.92□□□□□ -1.46
MSX2P35548 RPL7AP30-201ENST00000482859 796 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC080014.1-201ENST00000496877 1201 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC021087.2-201ENST00000504656 1203 ntBASIC5.92□□□□□ -1.46
MSX2P35548 TAS2R50-201ENST00000506868 1000 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
MSX2P35548 FABP5P12-201ENST00000515543 389 ntBASIC5.92□□□□□ -1.46
MSX2P35548 SNORA81.2-201ENST00000516868 170 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX2P35548 RPL12P22-201ENST00000519073 490 ntBASIC5.92□□□□□ -1.46
MSX2P35548 IGHVII-51-2-201ENST00000519778 259 ntBASIC5.92□□□□□ -1.46
MSX2P35548 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX2P35548 AC022880.1-201ENST00000534017 973 ntBASIC5.92□□□□□ -1.46
MSX2P35548 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX2P35548 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX2P35548 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX2P35548 CBX5-204ENST00000550411 894 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.92□□□□□ -1.46
MSX2P35548 TPRX1P1-201ENST00000557620 319 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC026956.1-201ENST00000558741 396 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX2P35548 CCL2-202ENST00000580907 736 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX2P35548 MTATP6P3-201ENST00000581686 676 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 AC097467.3-216ENST00000599555 1293 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 AL020997.3-201ENST00000602843 359 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AP001981.2-201ENST00000603241 418 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL590229.1-201ENST00000603497 542 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AP000811.1-201ENST00000603803 651 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL031601.1-201ENST00000605702 394 ntBASIC5.92□□□□□ -1.46
MSX2P35548 LINC02340-201ENST00000610335 626 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX2P35548 TP53TG1_2.1-201ENST00000611226 182 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL121782.1-201ENST00000611242 413 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AC024257.5-201ENST00000612739 531 ntBASIC5.92□□□□□ -1.46
MSX2P35548 MIR6085-201ENST00000618314 110 ntBASIC5.92□□□□□ -1.46
MSX2P35548 AL121985.3-201ENST00000620690 523 ntBASIC5.92□□□□□ -1.46
MSX2P35548 RNASE11-211ENST00000620912 883 ntAPPRIS P2 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 AC025262.3-201ENST00000623666 360 ntBASIC5.92□□□□□ -1.46
MSX2P35548 SATB1-AS1-266ENST00000630271 813 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 AC087565.2-201ENST00000637695 952 ntTSL 5 BASIC5.92□□□□□ -1.46
MSX2P35548 GIF-201ENST00000257248 1518 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 SCML2-202ENST00000398048 1334 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 AC095038.1-201ENST00000429248 1591 ntBASIC5.92□□□□□ -1.46
MSX2P35548 MTND5P29-201ENST00000458676 1807 ntBASIC5.92□□□□□ -1.46
MSX2P35548 TC2N-202ENST00000360594 3751 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 AL080276.2-201ENST00000637995 2090 ntTSL 3 BASIC5.92□□□□□ -1.46
MSX2P35548 TLR1-201ENST00000308979 2849 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
MSX2P35548 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC5.92□□□□□ -1.46
MSX2P35548 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms