Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RPS24P16-201ENST00000497294 392 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 AC104126.1-201ENST00000504004 711 ntTSL 3 BASIC5.26□□□□□ -1.57
HOXC4P09017 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC4P09017 AC022360.1-201ENST00000521058 340 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC4P09017 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC4P09017 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC4P09017 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC4P09017 AC024940.3-201ENST00000538551 316 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC4P09017 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC4P09017 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC4P09017 AC106730.2-201ENST00000566641 540 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC4P09017 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.26□□□□□ -1.57
HOXC4P09017 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC5.26□□□□□ -1.57
HOXC4P09017 AC025857.2-201ENST00000602711 238 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 AC006363.1-201ENST00000603806 463 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 AC092944.2-201ENST00000605443 889 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 AL356608.1-201ENST00000610034 820 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 CYP4F35P-202ENST00000636121 390 ntBASIC5.26□□□□□ -1.57
HOXC4P09017 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
HOXC4P09017 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC4P09017 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC4P09017 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
HOXC4P09017 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.26□□□□□ -1.57
HOXC4P09017 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
HOXC4P09017 ZNF83-203ENST00000541777 3743 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 SENP1-205ENST00000549595 1932 ntAPPRIS ALT1 TSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 STAG2-203ENST00000371145 4393 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 RN7SKP185-201ENST00000362813 326 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 RNA5SP507-201ENST00000363603 121 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 U3.28-201ENST00000391249 210 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 U3.36-201ENST00000408418 213 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 RN7SKP213-201ENST00000410746 298 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 Z86062.2-201ENST00000411442 380 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 GNG5P5-201ENST00000420444 220 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 AC245427.2-201ENST00000438839 263 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 GK-IT1-201ENST00000441146 397 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 AC008410.1-201ENST00000483777 339 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 AC008953.1-201ENST00000497334 318 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 MORF4L2P1-201ENST00000503761 858 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 OR5M14P-201ENST00000506803 618 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.25□□□□□ -1.57
HOXC4P09017 OR8G3P-201ENST00000533406 921 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.25□□□□□ -1.57
HOXC4P09017 AC044860.2-201ENST00000561005 179 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC5.25□□□□□ -1.57
HOXC4P09017 MIR7853-201ENST00000584820 132 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 AC244107.2-201ENST00000611773 76 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 SHMT1-211ENST00000618902 378 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 AP002505.2-201ENST00000623585 696 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 AC093849.1-201ENST00000563631 2209 ntBASIC5.25□□□□□ -1.57
HOXC4P09017 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
HOXC4P09017 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.25□□□□□ -1.57
HOXC4P09017 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
HOXC4P09017 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 ADAM24P-201ENST00000398655 2101 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 AC007342.5-201ENST00000571340 2142 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.24□□□□□ -1.57
HOXC4P09017 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC4P09017 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC4P09017 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
HOXC4P09017 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HOXC4P09017 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
HOXC4P09017 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
HOXC4P09017 AL603750.1-201ENST00000624216 1717 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 ARHGAP5-210ENST00000556611 4824 ntAPPRIS ALT1 TSL 5 BASIC5.24□□□□□ -1.57
HOXC4P09017 RNA5SP305-201ENST00000362665 119 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 AL645927.1-201ENST00000396783 406 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.24□□□□□ -1.57
HOXC4P09017 MORF4L2-205ENST00000423833 717 ntTSL 5 BASIC5.24□□□□□ -1.57
HOXC4P09017 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC4P09017 GAPDHP58-201ENST00000438477 1006 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 AURKAPS1-201ENST00000451805 1212 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 RN7SL329P-201ENST00000467740 299 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC4P09017 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC5.24□□□□□ -1.57
HOXC4P09017 AC111000.6-201ENST00000514471 709 ntBASIC5.24□□□□□ -1.57
HOXC4P09017 AC136777.2-201ENST00000522979 358 ntBASIC5.24□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms