Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXD4P09016 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.08□□□□□ -1.6
HOXD4P09016 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 RN7SKP145-201ENST00000363291 303 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 MIR551A-201ENST00000385042 96 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 RPL11P3-201ENST00000395256 523 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 AC009804.1-201ENST00000400949 179 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.08□□□□□ -1.6
HOXD4P09016 AL391097.2-201ENST00000435057 485 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXD4P09016 AL390119.1-201ENST00000440329 312 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 ABCC13-202ENST00000463099 3842 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 RN7SL51P-201ENST00000468230 285 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 RN7SL727P-201ENST00000482164 296 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 TRBV5-2-201ENST00000489095 273 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 RN7SL547P-201ENST00000490793 290 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 AP000926.3-201ENST00000497201 299 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXD4P09016 RNA5SP92-201ENST00000516437 110 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 RNU6-362P-201ENST00000516736 90 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 RN7SKP5-201ENST00000517045 272 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 IGLV3-30-201ENST00000524362 298 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXD4P09016 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.08□□□□□ -1.6
HOXD4P09016 AL136295.6-201ENST00000610486 658 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 AL139407.1-201ENST00000613826 1175 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 AC008115.4-201ENST00000619780 775 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 MIR8080-201ENST00000622224 89 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 SLC35A1-205ENST00000622775 1206 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.08□□□□□ -1.6
HOXD4P09016 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 GVINP1-202ENST00000531871 7271 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.08□□□□□ -1.6
HOXD4P09016 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 STYX-202ENST00000442123 4554 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 AC093591.2-201ENST00000565254 3843 ntBASIC5.08□□□□□ -1.6
HOXD4P09016 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
HOXD4P09016 CEP120-203ENST00000328236 4710 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
HOXD4P09016 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 TCF4-290ENST00000638154 7801 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
HOXD4P09016 PABPC1P6-201ENST00000445594 1829 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 FBXL21-201ENST00000297158 1305 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 AP004607.3-201ENST00000530354 3915 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 RNA5SP30-201ENST00000365552 115 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 RNF10P1-201ENST00000418589 369 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 NENFP1-201ENST00000419476 466 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC013268.2-201ENST00000420753 337 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 AL713851.2-201ENST00000431209 332 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 TEX41-206ENST00000432608 661 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXD4P09016 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXD4P09016 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXD4P09016 SUMO2P1-206ENST00000445436 284 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXD4P09016 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 AL450023.1-201ENST00000450868 751 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC103855.3-201ENST00000528445 606 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC090424.1-201ENST00000535243 736 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 HAUS8P1-201ENST00000549005 542 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.07□□□□□ -1.6
HOXD4P09016 MRPS21P7-201ENST00000566937 238 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 LYRM1-211ENST00000569023 769 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
HOXD4P09016 PPATP2-201ENST00000605635 508 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 ZNF701-207ENST00000611267 1136 ntTSL 2 BASIC5.07□□□□□ -1.6
HOXD4P09016 NF1P10-201ENST00000613227 742 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 AL359513.1-201ENST00000614364 557 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 AC007786.3-201ENST00000615154 596 ntBASIC5.07□□□□□ -1.6
HOXD4P09016 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.07□□□□□ -1.6
HOXD4P09016 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.07□□□□□ -1.6
HOXD4P09016 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
HOXD4P09016 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms