Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 NCOA6-202ENST00000374796 9311 ntAPPRIS P3 TSL 1 (best) BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AC079741.1-201ENST00000321498 212 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 RNU1-146P-201ENST00000364015 165 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AC104634.1-201ENST00000452720 462 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 Z92846.1-201ENST00000456203 268 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AC112184.1-201ENST00000505179 312 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 EIF3KP3-201ENST00000514461 639 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AL163952.1-202ENST00000569625 600 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AL353729.2-201ENST00000605859 1249 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 AC093799.2-201ENST00000610062 578 ntBASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC10.22□□□□□ -0.77
SHROOM4Q9ULL8 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC10.21□□□□□ -0.77
SHROOM4Q9ULL8 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.77
SHROOM4Q9ULL8 DCN-218ENST00000551354 2924 ntTSL 3 BASIC10.21□□□□□ -0.77
SHROOM4Q9ULL8 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 MIRLET7DHG-201ENST00000416309 1294 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 AC104071.1-201ENST00000505636 602 ntTSL 3 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 NPM1P42-201ENST00000560329 862 ntBASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 AC233968.1-201ENST00000611212 1300 ntBASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC10.21□□□□□ -0.78
SHROOM4Q9ULL8 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 GNG5P2-201ENST00000372054 207 ntBASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 RPS26P38-201ENST00000414476 348 ntBASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 AL353152.1-201ENST00000455973 470 ntTSL 5 BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 AC097484.1-201ENST00000471148 389 ntBASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 TOMM20P2-201ENST00000540082 421 ntBASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 AC090286.3-201ENST00000573133 187 ntBASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 AL596275.2-208ENST00000641192 594 ntBASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 AL117339.4-201ENST00000608335 7063 ntBASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 SGMS2-203ENST00000394686 2127 ntAPPRIS P1 TSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC10.2□□□□□ -0.78
SHROOM4Q9ULL8 NFATC3-201ENST00000329524 6144 ntTSL 1 (best) BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 RNA5SP505-201ENST00000364748 108 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 UBE2V2P1-201ENST00000434717 398 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 AC012594.1-271ENST00000438635 736 ntTSL 3 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 NDUFAF4P2-201ENST00000445374 520 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 CYCSP42-201ENST00000450823 238 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 RNU4-18P-201ENST00000516751 149 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 IGHVIII-47-1-201ENST00000518187 331 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 MIR4270-201ENST00000581799 70 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 AC019193.2-201ENST00000610012 634 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 AC012414.7-202ENST00000622705 1090 ntBASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 TRPC4-201ENST00000338947 2912 ntTSL 5 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 LUZP1-203ENST00000418342 8421 ntAPPRIS P1 TSL 5 BASIC10.19□□□□□ -0.78
SHROOM4Q9ULL8 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 ZRANB3-211ENST00000619650 2494 ntTSL 5 BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AC119751.6-201ENST00000416712 186 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 LINC01645-201ENST00000451341 491 ntTSL 3 BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 SCARNA16.4-201ENST00000516956 187 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AL627230.1-201ENST00000613077 211 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AL591926.8-201ENST00000616876 211 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AP003400.2-201ENST00000624036 666 ntBASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC10.18□□□□□ -0.78
SHROOM4Q9ULL8 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC10.18□□□□□ -0.78
Retrieved 100 of 98,524 protein–RNA pairs in 118 ms