Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LHX3Q9UBR4 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AL590763.1-201ENST00000398297 1545 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC011493.1-201ENST00000596753 1632 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 PNISR-202ENST00000438806 3142 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 MTHFD2P5-201ENST00000320415 844 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC007068.1-201ENST00000396690 844 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 HSPA8P15-201ENST00000401676 786 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 GNGT1-204ENST00000430875 628 ntTSL 2 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 RPS11P7-201ENST00000442125 465 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 FAR2P1-206ENST00000449736 709 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 RN7SL172P-201ENST00000460535 303 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC128716.1-201ENST00000475129 166 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 RN7SL30P-201ENST00000488416 306 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 RPS4XP14-201ENST00000493072 781 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 HIGD1AP14-201ENST00000507617 282 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC091987.1-201ENST00000517758 464 ntTSL 3 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 CDC42P3-201ENST00000518493 633 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 ASB8-215ENST00000540782 659 ntTSL 3 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 LINC02168-201ENST00000565327 352 ntTSL 2 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AC005252.1-201ENST00000604518 1063 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AL356608.1-201ENST00000610034 820 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AP002512.4-202ENST00000641599 4530 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 GYPA-212ENST00000616983 2538 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 FCRL5-202ENST00000368189 4424 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 PRG4-204ENST00000445192 5044 ntAPPRIS P3 TSL 5 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 THAP12P8-201ENST00000447914 2115 ntBASIC5.38□□□□□ -1.55
LHX3Q9UBR4 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AFF2-201ENST00000286437 12280 ntTSL 2 BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LHX3Q9UBR4 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 FCRL2-203ENST00000368181 1669 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 ABCC13-202ENST00000463099 3842 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC093909.5-201ENST00000621839 1799 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 CUL4AP1-201ENST00000514750 1863 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 LINC01981-201ENST00000432163 2833 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 RNA5SP514-201ENST00000363717 111 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AL136979.1-201ENST00000421645 1120 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC093655.2-201ENST00000425735 631 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC017019.1-201ENST00000426129 261 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC124944.2-201ENST00000429866 1242 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 OR7L1P-201ENST00000456181 380 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC079168.1-201ENST00000458741 345 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC110749.1-201ENST00000462007 357 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 CBX1P5-201ENST00000475330 559 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 RN7SL222P-201ENST00000476452 299 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC074386.1-201ENST00000476560 767 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC093827.1-201ENST00000480094 861 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 RN7SL727P-201ENST00000482164 296 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC072052.1-201ENST00000496556 306 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 RNA5SP92-201ENST00000516437 110 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 OR11J2P-201ENST00000555298 907 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 ARPP19-205ENST00000563566 568 ntTSL 4 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 AC126915.2-201ENST00000610957 190 ntBASIC5.37□□□□□ -1.55
LHX3Q9UBR4 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC5.37□□□□□ -1.55
LHX3Q9UBR4 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms