Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 NOSTRIN-206ENST00000444448 2537 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
VPS35Q96QK1 DDX18P6-201ENST00000450119 1997 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 MTERF4-204ENST00000406593 802 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 AL356968.2-201ENST00000412769 1257 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 GABARAPL3-201ENST00000412799 354 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 RPSAP35-201ENST00000413753 818 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 RPL12P17-201ENST00000432393 498 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 AL807757.1-201ENST00000437846 424 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 PPIAP20-201ENST00000449839 135 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 OR52Y1P-201ENST00000452418 828 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS35Q96QK1 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 GPRC5D-AS1-208ENST00000545914 566 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 AC009237.13-201ENST00000603193 276 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 AL139124.1-201ENST00000609123 421 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 AC093909.5-201ENST00000621839 1799 ntBASIC5.44□□□□□ -1.54
VPS35Q96QK1 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS35Q96QK1 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
VPS35Q96QK1 CCDC169-204ENST00000379864 5944 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
VPS35Q96QK1 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 ARHGAP5-206ENST00000539826 4881 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC092681.1-201ENST00000297369 291 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 RN7SKP185-201ENST00000362813 326 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AL358178.1-201ENST00000407698 397 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 PRUNEP1-201ENST00000425846 705 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC099670.2-201ENST00000435130 321 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC105399.1-202ENST00000447303 205 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AL672138.1-201ENST00000450604 1015 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 RPS4XP12-201ENST00000461747 709 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC023424.1-201ENST00000496058 459 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 MTND6P2-201ENST00000512226 524 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 RN7SKP99-201ENST00000517028 307 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AP003059.1-201ENST00000526206 432 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 VN1R81P-201ENST00000602085 372 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 MIR6862-1-201ENST00000613016 70 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 MIR6862-2-201ENST00000614755 70 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC007204.2-201ENST00000615022 616 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 GLYATL1-202ENST00000317391 1627 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC002525.1-201ENST00000624392 1622 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 CR382285.2-201ENST00000624662 1495 ntBASIC5.43□□□□□ -1.54
VPS35Q96QK1 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
VPS35Q96QK1 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
VPS35Q96QK1 AC079097.1-201ENST00000512187 1399 ntBASIC5.42□□□□□ -1.54
VPS35Q96QK1 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.42□□□□□ -1.54
VPS35Q96QK1 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
VPS35Q96QK1 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms