Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PTCHD3Q3KNS1 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.82□□□□□ -1.48
PTCHD3Q3KNS1 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.82□□□□□ -1.48
PTCHD3Q3KNS1 AC092111.2-201ENST00000611627 1414 ntBASIC5.82□□□□□ -1.48
PTCHD3Q3KNS1 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.82□□□□□ -1.48
PTCHD3Q3KNS1 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 LINC00032-203ENST00000640247 1374 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 ZNF729-201ENST00000601693 3877 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 TMSB4XP2-201ENST00000335179 210 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 XAGE5-201ENST00000351072 478 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RNA5SP477-201ENST00000362639 119 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RNA5SP514-201ENST00000363717 111 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RNA5SP510-201ENST00000364697 99 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AF228730.1-201ENST00000397972 663 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RPL7P58-201ENST00000402913 758 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 SSR1P2-201ENST00000415208 787 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 NAP1L4P2-201ENST00000425958 899 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AL031429.1-201ENST00000426775 749 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 PRKG1-AS1-202ENST00000426785 1111 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RPS3AP38-201ENST00000435889 763 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 NUDT7-202ENST00000437314 930 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AL353898.1-201ENST00000444055 238 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AL031313.1-201ENST00000448435 256 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 SNORD11.1-201ENST00000459482 85 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC084754.1-201ENST00000463466 464 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 MLF1-205ENST00000469452 1098 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 LARP7P4-201ENST00000481075 878 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RPS3AP15-201ENST00000483874 781 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 GCSAM-204ENST00000484193 1036 ntAPPRIS ALT1 TSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 EIF1P7-201ENST00000487533 337 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC105233.1-201ENST00000498840 781 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC021146.5-201ENST00000503544 545 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC093720.1-201ENST00000505681 714 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC139720.1-201ENST00000509497 512 ntTSL 3 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC114781.3-201ENST00000512083 142 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC133963.2-201ENST00000513686 578 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 LDHC-205ENST00000537486 583 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 RPA2P1-201ENST00000556557 721 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC005695.2-201ENST00000579641 259 ntTSL 3 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC008521.2-201ENST00000591021 259 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC008395.1-201ENST00000601752 607 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 PRKCQ-AS1-213ENST00000613985 883 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC096708.4-201ENST00000620563 552 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AC129915.3-201ENST00000634128 948 ntBASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 C12orf4-209ENST00000545746 2168 ntAPPRIS P1 TSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 TPTE2P2-202ENST00000605924 2113 ntTSL 5 BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.81□□□□□ -1.48
PTCHD3Q3KNS1 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 PCLO-201ENST00000333891 20329 ntAPPRIS P1 TSL 2 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 MFSD8-213ENST00000641134 1327 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 MAPK9-213ENST00000539014 1668 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 RNA5SP273-201ENST00000362484 113 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 PRH2-201ENST00000381847 641 ntAPPRIS P1 TSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 RNU6-481P-201ENST00000384194 107 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 TMBIM4-203ENST00000398033 844 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 RNASE9-202ENST00000404716 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL096711.1-201ENST00000404780 554 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 SNRPEP6-201ENST00000407465 277 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC017078.1-201ENST00000416146 368 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 TEX41-203ENST00000420472 765 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 NME1P1-201ENST00000420914 382 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 ZNF736P7Y-201ENST00000425158 820 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL035246.1-201ENST00000433554 1255 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 MTCYBP29-201ENST00000436327 1006 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 FABP5P3-201ENST00000437960 408 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL157827.1-201ENST00000447622 132 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 EXOSC3P1-201ENST00000448649 500 ntBASIC5.8□□□□□ -1.48
PTCHD3Q3KNS1 AL009048.1-201ENST00000450437 298 ntBASIC5.8□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms