Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 MEMO1P4-201ENST00000453590 386 ntBASIC5.93□□□□□ -1.46
HDAC4P56524 AC239798.3-201ENST00000454459 408 ntBASIC5.93□□□□□ -1.46
HDAC4P56524 SETP20-201ENST00000457046 852 ntBASIC5.93□□□□□ -1.46
HDAC4P56524 AL122019.1-202ENST00000458070 546 ntTSL 5 BASIC5.93□□□□□ -1.46
HDAC4P56524 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HDAC4P56524 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HDAC4P56524 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.93□□□□□ -1.46
HDAC4P56524 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC5.93□□□□□ -1.46
HDAC4P56524 AC137627.1-201ENST00000545761 289 ntBASIC5.93□□□□□ -1.46
HDAC4P56524 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.93□□□□□ -1.46
HDAC4P56524 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.93□□□□□ -1.46
HDAC4P56524 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC5.93□□□□□ -1.46
HDAC4P56524 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.93□□□□□ -1.46
HDAC4P56524 DISC1FP1-202ENST00000562245 774 ntTSL 3 BASIC5.93□□□□□ -1.46
HDAC4P56524 AC027281.1-201ENST00000574178 758 ntBASIC5.93□□□□□ -1.46
HDAC4P56524 AC100767.2-201ENST00000604840 693 ntBASIC5.93□□□□□ -1.46
HDAC4P56524 AC084036.1-201ENST00000609190 508 ntBASIC5.93□□□□□ -1.46
HDAC4P56524 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.93□□□□□ -1.46
HDAC4P56524 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.93□□□□□ -1.46
HDAC4P56524 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDAC4P56524 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.93□□□□□ -1.46
HDAC4P56524 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.93□□□□□ -1.46
HDAC4P56524 PIGK-202ENST00000370812 4596 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HDAC4P56524 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HDAC4P56524 ZNF345-215ENST00000614069 3103 ntAPPRIS P1 TSL 3 BASIC5.92□□□□□ -1.46
HDAC4P56524 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 ADAM24P-201ENST00000398655 2101 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 MRE11P1-201ENST00000464884 2127 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 CDC27P2-201ENST00000425026 1922 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.92□□□□□ -1.46
HDAC4P56524 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 RPS3AP2-201ENST00000407190 754 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 RNU2-72P-201ENST00000411175 163 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AC096921.1-201ENST00000411661 375 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC5.92□□□□□ -1.46
HDAC4P56524 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.92□□□□□ -1.46
HDAC4P56524 TOPORSLP1-202ENST00000469756 969 ntTSL 3 BASIC5.92□□□□□ -1.46
HDAC4P56524 AC098583.1-201ENST00000480875 255 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 RPS3AP15-201ENST00000483874 781 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AC106872.4-201ENST00000510050 523 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC5.92□□□□□ -1.46
HDAC4P56524 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 RNU6-760P-201ENST00000516078 97 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 IGLV3-24-201ENST00000517477 197 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 MTND1P36-201ENST00000522384 936 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 MRPS16P1-201ENST00000523462 412 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 IGHVIII-76-1-201ENST00000523776 286 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 OR10D4P-201ENST00000525892 951 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 HMGB1P42-201ENST00000532126 553 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 ATPAF1-210ENST00000532925 998 ntTSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC5.92□□□□□ -1.46
HDAC4P56524 AGGF1P7-201ENST00000562369 913 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.92□□□□□ -1.46
HDAC4P56524 AC006272.2-201ENST00000594725 163 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AC007423.1-201ENST00000605009 627 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AC109309.2-201ENST00000612597 332 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AP002371.2-201ENST00000624450 503 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.92□□□□□ -1.46
HDAC4P56524 AC119674.1-220ENST00000641502 1048 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 AL022311.1-201ENST00000623726 19416 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 NR2C2-213ENST00000617312 8113 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.92□□□□□ -1.46
HDAC4P56524 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.92□□□□□ -1.46
HDAC4P56524 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.92□□□□□ -1.46
HDAC4P56524 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.92□□□□□ -1.46
HDAC4P56524 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HDAC4P56524 AC106872.5-201ENST00000508856 1416 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.91□□□□□ -1.46
HDAC4P56524 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.91□□□□□ -1.46
HDAC4P56524 AC004076.2-201ENST00000620532 3323 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC5.91□□□□□ -1.46
HDAC4P56524 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HDAC4P56524 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.91□□□□□ -1.46
HDAC4P56524 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HDAC4P56524 TRIQK-211ENST00000520430 1829 ntAPPRIS P1 TSL 2 BASIC5.91□□□□□ -1.46
HDAC4P56524 RNA5SP326-201ENST00000363209 110 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 RNA5SP394-201ENST00000364216 119 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC5.91□□□□□ -1.46
HDAC4P56524 RNU6-152P-201ENST00000384037 107 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AC087752.1-201ENST00000391360 558 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 HMGB1P20-201ENST00000402555 677 ntBASIC5.91□□□□□ -1.46
HDAC4P56524 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.91□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms