Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.6□□□□□ -1.51
COL4A4P53420 U3.3-201ENST00000362986 216 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AP002530.1-201ENST00000405705 684 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.6□□□□□ -1.51
COL4A4P53420 AC124944.2-201ENST00000429866 1242 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 NPM1P18-201ENST00000434232 732 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AL162726.1-201ENST00000436084 455 ntTSL 3 BASIC5.6□□□□□ -1.51
COL4A4P53420 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC5.6□□□□□ -1.51
COL4A4P53420 RPL36AP15-201ENST00000444514 266 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.6□□□□□ -1.51
COL4A4P53420 RPSAP51-201ENST00000497462 645 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.6□□□□□ -1.51
COL4A4P53420 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC5.6□□□□□ -1.51
COL4A4P53420 RN7SL690P-201ENST00000582087 240 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AP001381.1-201ENST00000584109 534 ntTSL 5 BASIC5.6□□□□□ -1.51
COL4A4P53420 AC008814.1-201ENST00000603797 406 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AL392048.1-201ENST00000613946 534 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AL162574.1-201ENST00000615702 950 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
COL4A4P53420 AC073869.8-201ENST00000641806 335 ntBASIC5.6□□□□□ -1.51
COL4A4P53420 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC5.6□□□□□ -1.51
COL4A4P53420 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
COL4A4P53420 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.6□□□□□ -1.51
COL4A4P53420 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.6□□□□□ -1.51
COL4A4P53420 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 PYHIN1-203ENST00000368140 2083 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC5.6□□□□□ -1.51
COL4A4P53420 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC5.6□□□□□ -1.51
COL4A4P53420 ARHGAP20-203ENST00000527598 5998 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 NCOR1-201ENST00000268712 10720 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC5.6□□□□□ -1.51
COL4A4P53420 STON1-202ENST00000406226 5614 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
COL4A4P53420 SNORA62-201ENST00000365493 153 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC5.59□□□□□ -1.51
COL4A4P53420 AL133419.1-201ENST00000423153 640 ntTSL 3 BASIC5.59□□□□□ -1.51
COL4A4P53420 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 RPL7P11-201ENST00000437586 658 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 MTCYBP21-201ENST00000443300 1113 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
COL4A4P53420 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5.59□□□□□ -1.51
COL4A4P53420 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5.59□□□□□ -1.51
COL4A4P53420 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.59□□□□□ -1.51
COL4A4P53420 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.59□□□□□ -1.51
COL4A4P53420 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.59□□□□□ -1.51
COL4A4P53420 AC087855.1-201ENST00000518178 430 ntTSL 3 BASIC5.59□□□□□ -1.51
COL4A4P53420 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5.59□□□□□ -1.51
COL4A4P53420 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 AC091042.1-201ENST00000579213 173 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 MIR7853-201ENST00000584820 132 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC5.59□□□□□ -1.51
COL4A4P53420 AC011453.2-201ENST00000603737 729 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 SDAD1P1-202ENST00000524156 2051 ntBASIC5.59□□□□□ -1.51
COL4A4P53420 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC5.59□□□□□ -1.51
COL4A4P53420 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
COL4A4P53420 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC5.59□□□□□ -1.51
COL4A4P53420 ZNF490-201ENST00000311437 4237 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC5.59□□□□□ -1.51
COL4A4P53420 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
COL4A4P53420 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.59□□□□□ -1.51
COL4A4P53420 SLC35A3-207ENST00000533028 14759 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
COL4A4P53420 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A4P53420 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A4P53420 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A4P53420 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
COL4A4P53420 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
COL4A4P53420 SNORA11C-201ENST00000408532 129 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 RNA5SP113-201ENST00000410486 84 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 RN7SKP100-201ENST00000411258 284 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A4P53420 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A4P53420 AC138761.5-201ENST00000433967 325 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 AC012512.1-201ENST00000446594 718 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 NOP56P2-201ENST00000447491 769 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 AC068707.1-201ENST00000451438 391 ntTSL 3 BASIC5.59□□□□□ -1.52
COL4A4P53420 AP000797.2-201ENST00000475768 606 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.59□□□□□ -1.52
COL4A4P53420 GCSHP4-201ENST00000538792 439 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.59□□□□□ -1.52
COL4A4P53420 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.59□□□□□ -1.52
COL4A4P53420 MIR6780A-201ENST00000615089 68 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 AC012414.7-202ENST00000622705 1090 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 AP003400.3-201ENST00000624904 346 ntBASIC5.59□□□□□ -1.52
COL4A4P53420 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.52
COL4A4P53420 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC5.59□□□□□ -1.52
COL4A4P53420 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC5.59□□□□□ -1.52
COL4A4P53420 TTC3P1-201ENST00000399586 6081 ntBASIC5.59□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms