Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.29□□□□□ -1.56
SHMT2P34897 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 RANBP3L-202ENST00000502994 2278 ntAPPRIS ALT1 TSL 2 BASIC5.29□□□□□ -1.56
SHMT2P34897 MRRFP1-201ENST00000435941 1675 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SHMT2P34897 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SHMT2P34897 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.29□□□□□ -1.56
SHMT2P34897 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 GABARAPL3-201ENST00000412799 354 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.29□□□□□ -1.56
SHMT2P34897 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.29□□□□□ -1.56
SHMT2P34897 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 NDUFB4P8-201ENST00000435351 367 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 CYCSP12-201ENST00000437729 300 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.29□□□□□ -1.56
SHMT2P34897 GAPDHP14-201ENST00000450472 937 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 CBX1P2-201ENST00000453841 458 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 AC018638.3-201ENST00000461273 132 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
SHMT2P34897 MYLK-AS2-201ENST00000510827 500 ntTSL 3 BASIC5.29□□□□□ -1.56
SHMT2P34897 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 BLZF2P-201ENST00000553776 1130 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.29□□□□□ -1.56
SHMT2P34897 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 MIR3176-201ENST00000582210 90 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.29□□□□□ -1.56
SHMT2P34897 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.29□□□□□ -1.56
SHMT2P34897 AC010487.1-201ENST00000594408 1172 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.29□□□□□ -1.56
SHMT2P34897 AL139124.1-201ENST00000609123 421 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 AP000864.1-201ENST00000609424 650 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
SHMT2P34897 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
SHMT2P34897 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHMT2P34897 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHMT2P34897 AC079097.1-201ENST00000512187 1399 ntBASIC5.29□□□□□ -1.56
SHMT2P34897 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
SHMT2P34897 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.28□□□□□ -1.56
SHMT2P34897 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHMT2P34897 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHMT2P34897 PLSCR2-201ENST00000336685 1272 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 RN7SKP162-201ENST00000363605 345 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 U3.7-201ENST00000363668 216 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 RNA5SP335-201ENST00000363817 110 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHMT2P34897 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.28□□□□□ -1.56
SHMT2P34897 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 PRUNEP1-201ENST00000425846 705 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 CYCSP6-201ENST00000434498 302 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 AC073465.2-201ENST00000440938 498 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 RPS11P7-201ENST00000442125 465 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 TAAR4P-201ENST00000454843 1039 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 OR2AO1P-201ENST00000476497 403 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 RPL7P39-201ENST00000481157 744 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 AC109464.1-201ENST00000511091 819 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.28□□□□□ -1.56
SHMT2P34897 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.28□□□□□ -1.56
SHMT2P34897 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.28□□□□□ -1.56
SHMT2P34897 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.28□□□□□ -1.56
SHMT2P34897 LSM3P2-201ENST00000551246 273 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.28□□□□□ -1.56
SHMT2P34897 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.28□□□□□ -1.56
SHMT2P34897 AC005341.1-201ENST00000571086 708 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 AC011444.3-201ENST00000588342 325 ntTSL 3 BASIC5.28□□□□□ -1.56
SHMT2P34897 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.28□□□□□ -1.56
SHMT2P34897 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 MIR6826-201ENST00000617808 98 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 AC026367.3-201ENST00000619032 590 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 uc_338.7-201ENST00000621834 124 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 AC138965.3-201ENST00000623875 498 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 CASC19-264ENST00000641912 1184 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHMT2P34897 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 CPSF2-201ENST00000298875 13035 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.28□□□□□ -1.56
SHMT2P34897 HCFC2P1-201ENST00000392864 1592 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC5.28□□□□□ -1.56
SHMT2P34897 AC093849.1-201ENST00000563631 2209 ntBASIC5.28□□□□□ -1.56
SHMT2P34897 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
SHMT2P34897 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
SHMT2P34897 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
SHMT2P34897 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC5.27□□□□□ -1.57
SHMT2P34897 ATP5A1P1-201ENST00000454088 1321 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 77.6 ms