Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC6.6□□□□□ -1.35
SMARCA1P28370 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SMARCA1P28370 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
SMARCA1P28370 RNA5SP435-201ENST00000364044 108 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 MRRF-207ENST00000373729 870 ntTSL 3 BASIC6.6□□□□□ -1.35
SMARCA1P28370 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SMARCA1P28370 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
SMARCA1P28370 ST13P16-201ENST00000401760 781 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC6.6□□□□□ -1.35
SMARCA1P28370 AL662874.1-201ENST00000426065 230 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 LINC01611-201ENST00000428896 477 ntTSL 5 BASIC6.6□□□□□ -1.35
SMARCA1P28370 AC011242.1-201ENST00000433596 1158 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 MTND2P21-201ENST00000436242 1042 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AL138787.1-202ENST00000437804 898 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 Z84478.1-201ENST00000438230 1219 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AL161636.2-201ENST00000445179 927 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SMARCA1P28370 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
SMARCA1P28370 MEMO1P4-201ENST00000453590 386 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 MTND2P6-201ENST00000455337 1030 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC6.6□□□□□ -1.35
SMARCA1P28370 AC093719.1-201ENST00000480427 441 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC6.6□□□□□ -1.35
SMARCA1P28370 RPS7P6-201ENST00000485777 579 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 RPL7P51-201ENST00000490532 749 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 SUMO2P4-201ENST00000504193 276 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AK4P6-201ENST00000505168 528 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 C8orf22-203ENST00000517663 788 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
SMARCA1P28370 NRBF2P4-201ENST00000520874 850 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AGGF1P7-201ENST00000562369 913 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AP000897.2-201ENST00000579509 1057 ntTSL 3 BASIC6.6□□□□□ -1.35
SMARCA1P28370 AC060780.2-201ENST00000589047 198 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 AC011990.1-201ENST00000592809 734 ntTSL 3 BASIC6.6□□□□□ -1.35
SMARCA1P28370 AL157392.3-211ENST00000599378 509 ntTSL 4 BASIC6.6□□□□□ -1.35
SMARCA1P28370 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC6.6□□□□□ -1.35
SMARCA1P28370 AC126175.1-201ENST00000617041 758 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
SMARCA1P28370 CU639417.4-201ENST00000623928 207 ntBASIC6.6□□□□□ -1.35
SMARCA1P28370 LINC01677-205ENST00000635636 2362 ntTSL 5 BASIC6.6□□□□□ -1.35
SMARCA1P28370 ZNF559-ZNF177-201ENST00000434737 2340 ntAPPRIS ALT2 TSL 2 BASIC6.6□□□□□ -1.35
SMARCA1P28370 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC6.59□□□□□ -1.35
SMARCA1P28370 KARSP1-201ENST00000451871 1752 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 ECT2L-205ENST00000541398 4483 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC6.59□□□□□ -1.35
SMARCA1P28370 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 C3orf67-209ENST00000482387 2617 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 FGG-205ENST00000407946 1636 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 MIR122-201ENST00000385044 85 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 SNORA17A-201ENST00000391185 133 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 GAPDHP42-201ENST00000406848 981 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC6.59□□□□□ -1.35
SMARCA1P28370 AL596448.1-201ENST00000415024 392 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 METTL15P3-201ENST00000415522 1221 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 MTCO2P17-201ENST00000424336 677 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.59□□□□□ -1.35
SMARCA1P28370 RPS26P4-201ENST00000431743 355 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC6.59□□□□□ -1.35
SMARCA1P28370 AL450996.1-201ENST00000445574 1202 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 SORCS3-AS1-201ENST00000449805 1278 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC6.59□□□□□ -1.35
SMARCA1P28370 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC6.59□□□□□ -1.35
SMARCA1P28370 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC6.59□□□□□ -1.35
SMARCA1P28370 RPEP1-201ENST00000504507 658 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 NAMPTP2-201ENST00000505629 1115 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AC138866.2-201ENST00000508650 584 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC6.59□□□□□ -1.35
SMARCA1P28370 LINC02480-201ENST00000511875 612 ntTSL 2 BASIC6.59□□□□□ -1.35
SMARCA1P28370 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 RNU6-334P-201ENST00000517072 102 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC6.59□□□□□ -1.35
SMARCA1P28370 IGKV3D-34-201ENST00000522638 302 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC6.59□□□□□ -1.35
SMARCA1P28370 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 HSPE1P2-201ENST00000554777 306 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC6.59□□□□□ -1.35
SMARCA1P28370 LINC02520-201ENST00000570443 537 ntTSL 4 BASIC6.59□□□□□ -1.35
SMARCA1P28370 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 AC034236.3-201ENST00000605999 461 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AC112503.2-201ENST00000609005 552 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 AC245389.2-201ENST00000616023 576 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AC242843.1-201ENST00000618702 573 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 GXYLT1P5-202ENST00000618830 589 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.59□□□□□ -1.35
SMARCA1P28370 AC068880.4-201ENST00000623082 495 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 SNORA17.5-201ENST00000630429 132 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AC008993.2-201ENST00000631744 806 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6.59□□□□□ -1.35
SMARCA1P28370 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 UGT2B24P-201ENST00000514441 1597 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
SMARCA1P28370 AL731532.1-201ENST00000623972 4236 ntBASIC6.59□□□□□ -1.35
SMARCA1P28370 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC6.59□□□□□ -1.36
SMARCA1P28370 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC6.59□□□□□ -1.36
SMARCA1P28370 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC6.59□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 100.7 ms