Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 MIR585-201ENST00000384887 94 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AC119751.3-201ENST00000399720 670 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AC136624.1-201ENST00000400791 413 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 HMGB1P20-201ENST00000402555 677 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AL355615.1-201ENST00000406187 641 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AL096829.1-201ENST00000413677 457 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC6.77□□□□□ -1.33
COL6A1P12109 AC114803.1-201ENST00000417355 311 ntTSL 3 BASIC6.77□□□□□ -1.33
COL6A1P12109 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 VN1R21P-201ENST00000426703 765 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 USP9YP14-201ENST00000430663 563 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 CFL1P1-202ENST00000432948 411 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 MTND2P21-201ENST00000436242 1042 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 RNFT1P2-201ENST00000443064 757 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 RANP2-201ENST00000456833 229 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 RN7SL860P-201ENST00000473738 223 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 PCNAP1-201ENST00000505363 709 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC6.77□□□□□ -1.33
COL6A1P12109 BX510359.5-201ENST00000515651 304 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AC027419.2-201ENST00000518439 497 ntTSL 3 BASIC6.77□□□□□ -1.33
COL6A1P12109 AC130415.1-201ENST00000547569 1010 ntTSL 4 BASIC6.77□□□□□ -1.33
COL6A1P12109 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 AC024361.3-201ENST00000570919 333 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC6.77□□□□□ -1.33
COL6A1P12109 AC011443.1-201ENST00000599484 365 ntTSL 3 BASIC6.77□□□□□ -1.33
COL6A1P12109 AL160237.3-201ENST00000604114 1013 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AC024940.4-201ENST00000605507 246 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AC026741.1-201ENST00000605892 482 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 OR7A19P-201ENST00000608051 733 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 AL596220.1-201ENST00000622121 542 ntTSL 4 BASIC6.77□□□□□ -1.33
COL6A1P12109 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 CU639417.4-201ENST00000623928 207 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 AC073869.7-201ENST00000640874 297 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 MAPK1IP1L-201ENST00000395468 6480 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 AC007842.1-201ENST00000597336 2039 ntBASIC6.77□□□□□ -1.33
COL6A1P12109 OR7D4-203ENST00000641669 4965 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
COL6A1P12109 LINC00598-211ENST00000636621 3241 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 JPX-212ENST00000639185 9658 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 ST7-204ENST00000393444 2113 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 ETFBKMT-201ENST00000357721 6128 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC6.77□□□□□ -1.33
COL6A1P12109 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 AL136985.3-202ENST00000636386 2708 ntTSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL6A1P12109 ZNF233-205ENST00000592581 2938 ntTSL 2 BASIC6.77□□□□□ -1.33
COL6A1P12109 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC6.77□□□□□ -1.33
COL6A1P12109 HIPK1-204ENST00000369555 3966 ntTSL 5 BASIC6.76□□□□□ -1.33
COL6A1P12109 AL031651.1-201ENST00000615357 1438 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 PSG4-201ENST00000244295 1629 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC6.76□□□□□ -1.33
COL6A1P12109 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 ABI1-207ENST00000376142 3576 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 CSN1S1-201ENST00000246891 985 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 MIR16-2-201ENST00000362117 81 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 RNU6-298P-201ENST00000390888 96 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AL596448.1-201ENST00000415024 392 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.76□□□□□ -1.33
COL6A1P12109 AL353148.1-202ENST00000424701 551 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 BUD31P2-201ENST00000449374 300 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 TPT1P1-201ENST00000458495 518 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.76□□□□□ -1.33
COL6A1P12109 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC6.76□□□□□ -1.33
COL6A1P12109 UBA52P7-201ENST00000486088 380 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 PPP1R11P1-201ENST00000486095 376 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 NDUFB5P1-201ENST00000508134 564 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC010343.3-202ENST00000510327 619 ntTSL 3 BASIC6.76□□□□□ -1.33
COL6A1P12109 AC121161.1-201ENST00000510606 652 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC6.76□□□□□ -1.33
COL6A1P12109 RNU6-276P-201ENST00000516114 96 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC040970.1-202ENST00000517908 505 ntTSL 3 BASIC6.76□□□□□ -1.33
COL6A1P12109 OR4V1P-201ENST00000525394 1140 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC127526.3-201ENST00000534291 450 ntTSL 3 BASIC6.76□□□□□ -1.33
COL6A1P12109 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC6.76□□□□□ -1.33
COL6A1P12109 AC009120.3-201ENST00000563335 499 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC6.76□□□□□ -1.33
COL6A1P12109 AC007204.2-201ENST00000615022 616 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC025016.1-201ENST00000616746 682 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 AC093875.1-201ENST00000623688 504 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC6.76□□□□□ -1.33
COL6A1P12109 DDX43P2-201ENST00000604753 1354 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 TCP1P3-201ENST00000414406 1498 ntBASIC6.76□□□□□ -1.33
COL6A1P12109 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 OR5T2-202ENST00000641661 2062 ntAPPRIS ALT2 BASIC6.76□□□□□ -1.33
COL6A1P12109 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.76□□□□□ -1.33
COL6A1P12109 DAZ1-201ENST00000382510 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL6A1P12109 AC018628.1-201ENST00000624147 3819 ntBASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 80.5 ms