Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 RNU6-610P-201ENST00000384264 107 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC245036.1-201ENST00000391727 309 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 RPL5P20-201ENST00000403848 896 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL121835.1-201ENST00000404250 354 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 RN7SKP205-201ENST00000410999 307 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 MTND3P23-201ENST00000431980 347 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC091862.1-201ENST00000438016 1100 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL357520.1-201ENST00000441557 453 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AP003774.4-201ENST00000447028 672 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 VN1R38P-201ENST00000450265 887 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 HMGB1P26-201ENST00000452520 628 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 MTCYBP1-201ENST00000454315 1119 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC099509.1-201ENST00000502437 652 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC116353.2-201ENST00000505332 712 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC112518.2-201ENST00000508565 425 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC103833.1-201ENST00000517442 172 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC099805.1-205ENST00000521794 837 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 RAB3IP-214ENST00000550847 670 ntTSL 3 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CHEK2P2-201ENST00000554701 672 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL161757.3-201ENST00000555316 807 ntTSL 3 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL356022.1-202ENST00000555433 379 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL096869.1-201ENST00000557622 559 ntTSL 4 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC027104.1-201ENST00000563702 681 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 OR4H6P-201ENST00000563771 921 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC090286.3-201ENST00000573133 187 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC233702.7-202ENST00000582941 211 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 VN1R92P-201ENST00000598511 928 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC040170.1-201ENST00000602425 564 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC087468.1-201ENST00000604365 630 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AL591222.2-201ENST00000604443 754 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC073387.2-201ENST00000604797 784 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC008083.4-201ENST00000615076 444 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC135068.11-201ENST00000636378 921 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 AC087516.1-201ENST00000561236 2428 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 SEC61A2-202ENST00000304267 2030 ntTSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 ZNF480-201ENST00000334564 1843 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 Z95114.1-201ENST00000624264 14574 ntBASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 NLN-202ENST00000502464 8354 ntTSL 5 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC7.33□□□□□ -1.24
CCDC39Q9UFE4 ZC3H7A-214ENST00000575984 2632 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 SMG1P5-202ENST00000529428 4219 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 SMG1P2-201ENST00000566127 4221 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC011455.2-201ENST00000599320 3336 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 CLDN10-201ENST00000299339 949 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 IMPA1-202ENST00000311489 1106 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 FASLG-201ENST00000340030 917 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 MIR16-2-201ENST00000362117 81 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 RNU4-68P-201ENST00000364314 141 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 U3.52-201ENST00000384034 216 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 RNU6-636P-201ENST00000384598 107 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 HMGB3P19-201ENST00000403971 560 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 TEX41-202ENST00000414256 604 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AL161449.1-201ENST00000414531 1199 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AL449283.1-202ENST00000418249 604 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AJ239321.1-201ENST00000424255 564 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 QKI-206ENST00000424802 954 ntTSL 1 (best) BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC092651.1-201ENST00000426110 312 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AP003385.1-201ENST00000426387 893 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 FO393414.1-201ENST00000428697 1184 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AL133329.1-201ENST00000437466 478 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC083855.1-201ENST00000440041 258 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 MYO5BP2-201ENST00000449815 1277 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 CCNJP1-201ENST00000450600 1149 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC104233.1-201ENST00000458107 339 ntTSL 5 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 TFP1-201ENST00000460564 572 ntTSL 4 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC093663.2-201ENST00000484625 313 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 TFP1-203ENST00000490470 561 ntTSL 4 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC022206.1-201ENST00000495947 347 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC091951.3-201ENST00000504093 246 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 RNU2-30P-201ENST00000516209 141 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AP005639.2-201ENST00000527592 928 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 EIF1P4-201ENST00000572664 335 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 TTC39C-204ENST00000577185 533 ntTSL 3 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC005291.1-201ENST00000577743 641 ntTSL 2 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC008794.1-201ENST00000593063 560 ntTSL 4 BASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC005034.5-201ENST00000604219 466 ntBASIC7.32□□□□□ -1.24
CCDC39Q9UFE4 AC114477.1-201ENST00000605097 605 ntBASIC7.32□□□□□ -1.24
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms