Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 AC144833.1-201ENST00000567953 4089 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 CALN1-204ENST00000405452 8571 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AC125336.1-201ENST00000508893 2827 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 PPIAP9-201ENST00000403866 498 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AL445213.1-201ENST00000412589 747 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 OR2AT2P-201ENST00000413438 905 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AL445190.1-201ENST00000416448 288 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AC113412.1-201ENST00000425840 504 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AL662874.1-201ENST00000426065 230 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 SUMO2P3-201ENST00000438311 288 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 RPL31P15-201ENST00000449770 338 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 RN7SL583P-201ENST00000475692 287 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 TRBV8-1-201ENST00000481590 279 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AC109481.1-201ENST00000509173 282 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 EIF4A2P3-201ENST00000525903 1055 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AC090286.3-201ENST00000573133 187 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 IGLCOR22-2-201ENST00000605398 313 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 Z98949.1-207ENST00000609157 814 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 STATH-208ENST00000615994 598 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 uc_338.7-201ENST00000621834 124 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AC073869.7-201ENST00000640874 297 ntBASIC5.7□□□□□ -1.5
PCDH9Q9HC56 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.7□□□□□ -1.5
PCDH9Q9HC56 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC005261.6-201ENST00000623072 1387 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 RIMS2-209ENST00000507740 8002 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 RNA5SP131-201ENST00000365452 119 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AL607077.1-201ENST00000401718 499 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AP000949.1-201ENST00000438328 629 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 LINC01851-201ENST00000443419 637 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 RPL36AP39-201ENST00000445859 318 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC112184.1-201ENST00000505179 312 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC138409.2-202ENST00000507274 458 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC021180.1-201ENST00000508581 558 ntTSL 4 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC021193.1-201ENST00000511607 420 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 RNU6-467P-201ENST00000517027 110 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 OR8K2P-201ENST00000524645 927 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC025423.2-201ENST00000537570 439 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC010547.6-201ENST00000571789 193 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC020978.7-201ENST00000575953 1187 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC025574.2-201ENST00000615621 514 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AL138960.2-201ENST00000625145 535 ntBASIC5.69□□□□□ -1.5
PCDH9Q9HC56 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PCDH9Q9HC56 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 RGS17-202ENST00000367225 7773 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
PCDH9Q9HC56 BCL2A1-202ENST00000335661 809 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 94 ms