Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC079226.2-201ENST00000509283 518 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC009623.1-201ENST00000517964 1131 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC010245.2-201ENST00000606908 1167 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC112211.1-201ENST00000607832 305 ntTSL 3 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 MIR6768-201ENST00000610734 72 ntBASIC5.47□□□□□ -1.53
VPS35Q96QK1 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 UOX-205ENST00000640983 544 ntTSL 4 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 DPP8-203ENST00000341861 8699 ntAPPRIS P4 TSL 2 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 METTL15-201ENST00000303459 4068 ntTSL 2 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.47□□□□□ -1.53
VPS35Q96QK1 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
VPS35Q96QK1 UGT2A1-205ENST00000512704 2519 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
VPS35Q96QK1 CASC19-248ENST00000641674 1356 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 MYRFL-201ENST00000299350 820 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 RNA5SP319-201ENST00000362768 119 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 RN7SKP269-201ENST00000365545 319 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC092642.1-201ENST00000392417 425 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 RPL7P56-201ENST00000429441 717 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 PSAT1P4-201ENST00000466500 526 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC100832.1-201ENST00000471945 383 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC090638.1-201ENST00000498296 909 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 SUMO2P4-201ENST00000504193 276 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 RNA5SP362-201ENST00000516048 118 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC010401.3-201ENST00000576600 582 ntTSL 4 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC027216.1-201ENST00000577726 685 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 AC006272.2-201ENST00000594725 163 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 MIR8080-201ENST00000622224 89 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 AL049767.1-202ENST00000637826 242 ntBASIC5.46□□□□□ -1.54
VPS35Q96QK1 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
VPS35Q96QK1 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
VPS35Q96QK1 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 DLGAP1-AS2-202ENST00000573177 1388 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 MTHFD2P5-201ENST00000320415 844 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 BPHL-201ENST00000380368 797 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 U3.25-201ENST00000391209 220 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 OR3A2-201ENST00000408891 1076 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 LINC02518-201ENST00000421737 524 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 RPS27AP6-201ENST00000427962 448 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 RANP1-206ENST00000455094 651 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 RN7SL51P-201ENST00000468230 285 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 RPL35AP19-201ENST00000469425 329 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 AP001960.1-201ENST00000506494 658 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 UCHL1-AS1-201ENST00000507190 592 ntTSL 4 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC021106.1-201ENST00000509020 1058 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 OR4A17P-201ENST00000526032 904 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC078878.1-201ENST00000539832 958 ntBASIC5.45□□□□□ -1.54
VPS35Q96QK1 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
VPS35Q96QK1 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
VPS35Q96QK1 PROS2P-201ENST00000474651 1951 ntBASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms