Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC7.43□□□□□ -1.22
MSH6P52701 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC7.43□□□□□ -1.22
MSH6P52701 TMOD2-201ENST00000249700 9191 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 SNX18P3-202ENST00000565670 1750 ntBASIC7.43□□□□□ -1.22
MSH6P52701 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC7.43□□□□□ -1.22
MSH6P52701 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC7.43□□□□□ -1.22
MSH6P52701 HIPK2-202ENST00000406875 15049 ntAPPRIS P4 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 AC013268.3-201ENST00000262716 2324 ntBASIC7.43□□□□□ -1.22
MSH6P52701 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 AL669831.5-218ENST00000591702 1873 ntBASIC7.43□□□□□ -1.22
MSH6P52701 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC7.43□□□□□ -1.22
MSH6P52701 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 RNU1-146P-201ENST00000364015 165 ntBASIC7.43□□□□□ -1.22
MSH6P52701 MIR600-201ENST00000385007 98 ntBASIC7.43□□□□□ -1.22
MSH6P52701 AL049693.1-201ENST00000402760 611 ntBASIC7.43□□□□□ -1.22
MSH6P52701 AC007064.3-201ENST00000422608 359 ntBASIC7.43□□□□□ -1.22
MSH6P52701 USP24P1-201ENST00000433802 779 ntBASIC7.43□□□□□ -1.22
MSH6P52701 AC073410.1-201ENST00000435125 589 ntBASIC7.43□□□□□ -1.22
MSH6P52701 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC7.43□□□□□ -1.22
MSH6P52701 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC7.43□□□□□ -1.22
MSH6P52701 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC7.43□□□□□ -1.22
MSH6P52701 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC7.43□□□□□ -1.22
MSH6P52701 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC7.43□□□□□ -1.22
MSH6P52701 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 AC009962.1-201ENST00000567327 3813 ntBASIC7.43□□□□□ -1.22
MSH6P52701 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC7.43□□□□□ -1.22
MSH6P52701 DZIP3-201ENST00000361582 5350 ntAPPRIS P1 TSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC7.43□□□□□ -1.22
MSH6P52701 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC7.43□□□□□ -1.22
MSH6P52701 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSH6P52701 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSH6P52701 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC7.42□□□□□ -1.22
MSH6P52701 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC7.42□□□□□ -1.22
MSH6P52701 MR1-209ENST00000617803 7584 ntTSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
MSH6P52701 OR4N5-201ENST00000333629 927 ntAPPRIS P1 BASIC7.42□□□□□ -1.22
MSH6P52701 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC7.42□□□□□ -1.22
MSH6P52701 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 NUDT19P3-201ENST00000404698 555 ntBASIC7.42□□□□□ -1.22
MSH6P52701 RPSAP35-201ENST00000413753 818 ntBASIC7.42□□□□□ -1.22
MSH6P52701 RNF10P1-201ENST00000418589 369 ntBASIC7.42□□□□□ -1.22
MSH6P52701 AC063943.1-201ENST00000465434 453 ntBASIC7.42□□□□□ -1.22
MSH6P52701 AC140172.1-201ENST00000502928 141 ntBASIC7.42□□□□□ -1.22
MSH6P52701 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC7.42□□□□□ -1.22
MSH6P52701 RN7SKP260-201ENST00000516907 149 ntBASIC7.42□□□□□ -1.22
MSH6P52701 IGKV1-32-201ENST00000519290 311 ntBASIC7.42□□□□□ -1.22
MSH6P52701 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC7.42□□□□□ -1.22
MSH6P52701 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC7.42□□□□□ -1.22
MSH6P52701 AC091042.1-201ENST00000579213 173 ntBASIC7.42□□□□□ -1.22
MSH6P52701 RPL26P30-202ENST00000602923 645 ntBASIC7.42□□□□□ -1.22
MSH6P52701 NAA60-237ENST00000615865 326 ntTSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC7.42□□□□□ -1.22
MSH6P52701 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC7.42□□□□□ -1.22
MSH6P52701 MARCH6-201ENST00000274140 9569 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSH6P52701 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC7.42□□□□□ -1.22
MSH6P52701 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSH6P52701 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSH6P52701 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSH6P52701 CASC1-201ENST00000320267 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSH6P52701 BAALC-AS1-201ENST00000499522 1353 ntTSL 5 BASIC7.41□□□□□ -1.22
MSH6P52701 SPATA31D5P-202ENST00000527857 4863 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSH6P52701 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC7.41□□□□□ -1.22
MSH6P52701 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC7.41□□□□□ -1.22
MSH6P52701 RNA5SP479-201ENST00000364858 117 ntBASIC7.41□□□□□ -1.22
MSH6P52701 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC7.41□□□□□ -1.22
MSH6P52701 OR51I1-201ENST00000380211 945 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
MSH6P52701 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC7.41□□□□□ -1.22
MSH6P52701 RPL23AP17-201ENST00000401064 499 ntBASIC7.41□□□□□ -1.22
MSH6P52701 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC7.41□□□□□ -1.22
MSH6P52701 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC7.41□□□□□ -1.22
MSH6P52701 AC092651.1-201ENST00000426110 312 ntBASIC7.41□□□□□ -1.22
MSH6P52701 AL008723.2-201ENST00000426354 562 ntTSL 4 BASIC7.41□□□□□ -1.22
MSH6P52701 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC7.41□□□□□ -1.22
MSH6P52701 AC239367.2-201ENST00000447309 705 ntBASIC7.41□□□□□ -1.22
MSH6P52701 RPL10P17-201ENST00000453852 316 ntBASIC7.41□□□□□ -1.22
MSH6P52701 ATP5LP5-201ENST00000483050 299 ntBASIC7.41□□□□□ -1.22
MSH6P52701 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC7.41□□□□□ -1.22
MSH6P52701 AC078899.1-201ENST00000521432 1185 ntBASIC7.41□□□□□ -1.22
MSH6P52701 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC7.41□□□□□ -1.22
MSH6P52701 OR11H7-201ENST00000553765 945 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
MSH6P52701 AC233699.1-201ENST00000569955 1168 ntBASIC7.41□□□□□ -1.22
MSH6P52701 AC068790.7-201ENST00000602347 528 ntBASIC7.41□□□□□ -1.22
MSH6P52701 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC7.41□□□□□ -1.22
MSH6P52701 OR1S2-202ENST00000641683 941 ntAPPRIS P1 BASIC7.41□□□□□ -1.22
MSH6P52701 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC7.41□□□□□ -1.22
Retrieved 100 of 98,524 protein–RNA pairs in 128.5 ms