Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
PTPN9P43378 OR4C11-201ENST00000302231 1045 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
PTPN9P43378 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.85□□□□□ -1.47
PTPN9P43378 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC5.85□□□□□ -1.47
PTPN9P43378 GAPDHP42-201ENST00000406848 981 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 RMRPP5-201ENST00000411156 267 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC5.85□□□□□ -1.47
PTPN9P43378 BMS1P17-202ENST00000416720 316 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC5.85□□□□□ -1.47
PTPN9P43378 AL662874.1-201ENST00000426065 230 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 RNF19BPX-201ENST00000426224 625 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 MGAT2P2-201ENST00000427194 797 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 BX119321.1-201ENST00000428912 797 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 HSFY7P-201ENST00000432672 318 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 HSFY8P-201ENST00000437934 318 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC5.85□□□□□ -1.47
PTPN9P43378 Z99127.2-201ENST00000441426 334 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 SUMO2P1-206ENST00000445436 284 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
PTPN9P43378 HSFY5P-201ENST00000453726 309 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 BBIP1-208ENST00000454061 812 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 AC104629.1-201ENST00000494226 508 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.85□□□□□ -1.47
PTPN9P43378 AC022826.1-201ENST00000519383 805 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC5.85□□□□□ -1.47
PTPN9P43378 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC5.85□□□□□ -1.47
PTPN9P43378 H3F3BP2-201ENST00000583907 357 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.85□□□□□ -1.47
PTPN9P43378 DNAJC19P3-201ENST00000594491 331 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AP001172.1-201ENST00000602921 581 ntTSL 3 BASIC5.85□□□□□ -1.47
PTPN9P43378 HMGB1P51-201ENST00000605166 638 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AC025574.2-201ENST00000615621 514 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 AP003499.2-201ENST00000624100 483 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
PTPN9P43378 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.85□□□□□ -1.47
PTPN9P43378 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 AC010266.2-201ENST00000564741 3255 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 AC097063.1-201ENST00000426714 1797 ntBASIC5.85□□□□□ -1.47
PTPN9P43378 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC5.85□□□□□ -1.47
PTPN9P43378 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
PTPN9P43378 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC5.84□□□□□ -1.47
PTPN9P43378 HSPA13-201ENST00000285667 3986 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
PTPN9P43378 CASC19-260ENST00000641828 2001 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PTPN9P43378 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
PTPN9P43378 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
PTPN9P43378 AC112255.1-201ENST00000624070 2493 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 RNA5SP46-201ENST00000362370 120 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 RN7SKP185-201ENST00000362813 326 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AL009179.1-201ENST00000406085 265 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AC007161.1-204ENST00000423039 460 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 RIMKLBP2-201ENST00000424737 654 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 MTND6P12-201ENST00000428247 522 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 UBE2V1P6-201ENST00000430840 422 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 GAPDHP34-201ENST00000432112 823 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AC099670.2-201ENST00000435130 321 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 Z84478.1-201ENST00000438230 1219 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.84□□□□□ -1.47
PTPN9P43378 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.84□□□□□ -1.47
PTPN9P43378 AC073109.1-201ENST00000445066 978 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.84□□□□□ -1.47
PTPN9P43378 AC105918.1-201ENST00000474399 838 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AC245041.2-201ENST00000479781 376 ntTSL 5 BASIC5.84□□□□□ -1.47
PTPN9P43378 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.84□□□□□ -1.47
PTPN9P43378 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.84□□□□□ -1.47
PTPN9P43378 AC097515.1-201ENST00000512370 435 ntTSL 2 BASIC5.84□□□□□ -1.47
PTPN9P43378 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.84□□□□□ -1.47
PTPN9P43378 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC5.84□□□□□ -1.47
PTPN9P43378 AC090888.3-201ENST00000558917 509 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AC010547.6-201ENST00000571789 193 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC5.84□□□□□ -1.47
PTPN9P43378 AL133247.2-201ENST00000603236 482 ntBASIC5.84□□□□□ -1.47
PTPN9P43378 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC5.84□□□□□ -1.47
PTPN9P43378 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.84□□□□□ -1.47
PTPN9P43378 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
PTPN9P43378 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC5.84□□□□□ -1.47
PTPN9P43378 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.84□□□□□ -1.48
PTPN9P43378 AC109446.4-201ENST00000623235 2755 ntBASIC5.84□□□□□ -1.48
PTPN9P43378 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.84□□□□□ -1.48
PTPN9P43378 ADAM29-202ENST00000404450 3171 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
PTPN9P43378 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
PTPN9P43378 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
PTPN9P43378 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
PTPN9P43378 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.83□□□□□ -1.48
PTPN9P43378 RNU6-1176P-201ENST00000390955 107 ntBASIC5.83□□□□□ -1.48
PTPN9P43378 SYCE3-202ENST00000406915 448 ntAPPRIS P1 TSL 2 BASIC5.83□□□□□ -1.48
PTPN9P43378 NACAP7-201ENST00000407371 609 ntBASIC5.83□□□□□ -1.48
PTPN9P43378 AL158827.1-201ENST00000416300 391 ntBASIC5.83□□□□□ -1.48
PTPN9P43378 GTF3AP1-201ENST00000416942 1004 ntBASIC5.83□□□□□ -1.48
PTPN9P43378 ICA1L-206ENST00000418208 602 ntTSL 4 BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 120.6 ms