Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 NPM1P40-201ENST00000412758 733 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 P2RY10P2-201ENST00000416730 913 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AC092941.2-201ENST00000444379 1008 ntTSL 3 BASIC5.12□□□□□ -1.59
COL5A1P20908 RPL31P44-201ENST00000447680 377 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.12□□□□□ -1.59
COL5A1P20908 TAAR4P-201ENST00000454843 1039 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 snoU13.20-201ENST00000459180 104 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 RN7SL481P-201ENST00000477764 299 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AC058823.1-201ENST00000485315 474 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 HPRT1P1-201ENST00000509498 657 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.12□□□□□ -1.59
COL5A1P20908 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 AL627230.1-201ENST00000613077 211 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AL591926.8-201ENST00000616876 211 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AC015660.5-201ENST00000623238 564 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AC005618.4-201ENST00000625053 554 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC5.12□□□□□ -1.59
COL5A1P20908 AC000095.2-202ENST00000637415 154 ntBASIC5.12□□□□□ -1.59
COL5A1P20908 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.12□□□□□ -1.59
COL5A1P20908 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.12□□□□□ -1.59
COL5A1P20908 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 THADA-207ENST00000405975 6114 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC5.12□□□□□ -1.59
COL5A1P20908 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
COL5A1P20908 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 IL3-201ENST00000296870 1050 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
COL5A1P20908 RPS4XP9-201ENST00000405151 780 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 AC012519.1-201ENST00000424588 610 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 LINC01781-202ENST00000443104 591 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 NDUFA5P8-201ENST00000449019 346 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.11□□□□□ -1.59
COL5A1P20908 RPS4XP20-201ENST00000505751 772 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 IGBP1P5-201ENST00000507524 1000 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 LINC02231-201ENST00000510459 447 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 DNAL1-206ENST00000554871 632 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 AL163932.1-201ENST00000555776 542 ntTSL 4 BASIC5.11□□□□□ -1.59
COL5A1P20908 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC025857.2-201ENST00000602711 238 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC5.11□□□□□ -1.59
COL5A1P20908 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 NEDD9-202ENST00000379446 4536 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 RBM25-201ENST00000261973 6910 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 GAS1RR-201ENST00000415801 4387 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 WDCP-201ENST00000295148 3817 ntAPPRIS P3 TSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 MSL3P1-202ENST00000440028 1468 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 PYROXD1-205ENST00000538582 3639 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 BRWD1-203ENST00000342449 12929 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 MFAP3L-203ENST00000393704 5827 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 MEIS1-201ENST00000272369 4291 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 U3.3-201ENST00000362986 216 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 RNA5SP479-201ENST00000364858 117 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 AL353625.1-202ENST00000366273 571 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 XAGE1A-202ENST00000375600 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 XAGE1B-202ENST00000375613 474 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 C2orf73-203ENST00000405749 576 ntTSL 4 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC096921.1-201ENST00000411661 375 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 AC019050.1-201ENST00000418508 492 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 AL451047.1-201ENST00000424451 814 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC009127.1-201ENST00000467090 155 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 C1orf143-202ENST00000491260 813 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC122688.1-201ENST00000541494 223 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 DUXA-201ENST00000554048 1006 ntAPPRIS P1 TSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC068112.1-201ENST00000580057 346 ntTSL 3 BASIC5.11□□□□□ -1.59
COL5A1P20908 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 AC108738.1-201ENST00000603703 237 ntBASIC5.11□□□□□ -1.59
COL5A1P20908 ZNF638-201ENST00000264447 6505 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
COL5A1P20908 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.11□□□□□ -1.59
COL5A1P20908 CR1-204ENST00000367052 7469 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 CR1-205ENST00000367053 7469 ntTSL 5 BASIC5.11□□□□□ -1.59
COL5A1P20908 EFNA5-206ENST00000611503 4933 ntTSL 5 BASIC5.1□□□□□ -1.59
COL5A1P20908 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
COL5A1P20908 SNX18P3-202ENST00000565670 1750 ntBASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 78.5 ms