Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 OR7E116P-201ENST00000448529 957 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXD4P09016 AC011225.1-201ENST00000457751 369 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AL157777.1-201ENST00000468100 304 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AC068633.1-202ENST00000476460 458 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 AC135999.1-201ENST00000478962 479 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 RPL7P39-201ENST00000481157 744 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 RPL38P3-201ENST00000484463 213 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.12□□□□□ -1.59
HOXD4P09016 AC106864.2-201ENST00000505632 740 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC5.12□□□□□ -1.59
HOXD4P09016 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 AC096996.1-201ENST00000563813 325 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AC106729.1-201ENST00000567777 466 ntTSL 3 BASIC5.12□□□□□ -1.59
HOXD4P09016 AL118556.2-201ENST00000614375 824 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC5.12□□□□□ -1.59
HOXD4P09016 AC118658.2-201ENST00000618697 459 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AF117829.2-201ENST00000619538 361 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AL353684.1-201ENST00000622677 1120 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.12□□□□□ -1.59
HOXD4P09016 SAMMSON-227ENST00000642114 1199 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 IL1RAP-205ENST00000412504 4875 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 LINC01206-204ENST00000482787 9580 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 SLC7A11-201ENST00000280612 9645 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
HOXD4P09016 MTCO1P8-201ENST00000416914 1523 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 AC012078.1-201ENST00000405035 1646 ntBASIC5.12□□□□□ -1.59
HOXD4P09016 CD86-204ENST00000469710 1604 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.12□□□□□ -1.59
HOXD4P09016 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 ZMAT1-201ENST00000372782 3185 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 DCN-202ENST00000393155 2133 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 AC007342.5-201ENST00000571340 2142 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 OR1L4-201ENST00000259466 936 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HOXD4P09016 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HOXD4P09016 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXD4P09016 RNA5SP319-201ENST00000362768 119 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXD4P09016 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
HOXD4P09016 DPPA2P3-201ENST00000411853 655 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXD4P09016 AL357752.1-201ENST00000412817 349 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 NPM1P48-201ENST00000436002 853 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 FMO7P-201ENST00000436045 768 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AC012075.1-201ENST00000436549 580 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXD4P09016 MEMO1P4-201ENST00000453590 386 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AC112495.1-201ENST00000456037 756 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXD4P09016 RPL32P33-201ENST00000487023 394 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 EIF1P7-201ENST00000487533 337 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 RN7SL30P-201ENST00000488416 306 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 AC231760.1-201ENST00000498002 260 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AC068672.3-203ENST00000505166 311 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXD4P09016 AC006499.3-201ENST00000506077 748 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC5.11□□□□□ -1.59
HOXD4P09016 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 SNORA48.9-201ENST00000516419 162 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AC139365.2-201ENST00000517972 253 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AP006245.2-201ENST00000522004 300 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXD4P09016 OR10G5P-201ENST00000532733 358 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 APPL2-203ENST00000546731 684 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXD4P09016 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXD4P09016 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXD4P09016 AC060780.2-201ENST00000589047 198 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXD4P09016 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.11□□□□□ -1.59
HOXD4P09016 AC010245.2-201ENST00000606908 1167 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 MIR6798-201ENST00000612887 67 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 Metazoa_SRP.111-201ENST00000614073 259 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AP005212.4-201ENST00000614206 710 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 WBP1LP8-201ENST00000617401 327 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 SAMMSON-209ENST00000641222 1100 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 AC109780.1-201ENST00000451768 1344 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 AC114786.1-201ENST00000512892 1415 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 ZNF493-202ENST00000355504 4386 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.11□□□□□ -1.59
HOXD4P09016 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXD4P09016 C4BPAP1-201ENST00000415474 1893 ntBASIC5.11□□□□□ -1.59
HOXD4P09016 GCSAML-201ENST00000366488 3820 ntAPPRIS P3 TSL 1 (best) BASIC5.11□□□□□ -1.59
HOXD4P09016 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXD4P09016 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC5.11□□□□□ -1.59
HOXD4P09016 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXD4P09016 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
HOXD4P09016 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.1□□□□□ -1.59
HOXD4P09016 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms