Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AP002833.3-201ENST00000625075 2265 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 LINC01020-202ENST00000508201 1800 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 UBXN7-201ENST00000296328 10568 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 PAGE2B-202ENST00000374974 456 ntTSL 5 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 RNU1-77P-201ENST00000390868 162 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 NAP1L4P2-201ENST00000425958 899 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC012497.1-201ENST00000429392 575 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 DNAJB5P1-201ENST00000454004 806 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 LINC01780-202ENST00000457683 391 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC090602.1-201ENST00000469695 252 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 RN7SL547P-201ENST00000490793 290 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 OR52A4P-203ENST00000498233 1014 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 MTATP6P1-201ENST00000514057 681 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 RNU6-941P-201ENST00000516346 108 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC100801.1-201ENST00000517368 517 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC026401.1-201ENST00000549756 530 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 MIR3908-201ENST00000579798 126 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC005252.1-201ENST00000604518 1063 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 ASNSD1-208ENST00000607690 535 ntTSL 2 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 ASNSD1-209ENST00000607829 581 ntTSL 2 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC007204.2-201ENST00000615022 616 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 AL691477.1-201ENST00000624398 162 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 MYOCOS-202ENST00000636788 1039 ntAPPRIS ALT2 TSL 5 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 SMG1P7-201ENST00000565246 2704 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 PRDM2-206ENST00000413440 6175 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 MIPEPP2-201ENST00000422560 1819 ntBASIC5.69□□□□□ -1.5
SIX2Q9NPC8 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.69□□□□□ -1.5
SIX2Q9NPC8 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 ATPAF1-212ENST00000542495 1779 ntTSL 2 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 SERPINB7-207ENST00000546027 1951 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 RN7SKP293-201ENST00000411389 296 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC079807.1-201ENST00000429993 481 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 NAP1L4P3-201ENST00000432820 1147 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 UBE2V2P1-201ENST00000434717 398 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 CLUHP1-201ENST00000435012 1190 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC046176.1-201ENST00000435260 1170 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 CYCSP12-201ENST00000437729 300 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC023141.9-201ENST00000458734 412 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 RPL7P6-201ENST00000480903 738 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 RN7SL184P-201ENST00000488308 297 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 MTND2P31-201ENST00000512602 616 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AZIN1-AS1-203ENST00000517996 756 ntTSL 3 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC100784.1-201ENST00000522790 310 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 HMGB1P40-201ENST00000525121 540 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 SLC7A7-210ENST00000554517 1158 ntTSL 5 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 SNORD95-201ENST00000579879 68 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC009597.2-201ENST00000604659 592 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AP003400.6-201ENST00000624698 740 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 AC104461.1-201ENST00000637430 817 ntTSL 5 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 DNAH12-203ENST00000389536 2613 ntTSL 5 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 OR55B1P-203ENST00000641518 2602 ntBASIC5.68□□□□□ -1.5
SIX2Q9NPC8 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 ZNF677-201ENST00000333952 3422 ntAPPRIS P1 TSL 2 BASIC5.68□□□□□ -1.5
SIX2Q9NPC8 CASC19-248ENST00000641674 1356 ntBASIC5.67□□□□□ -1.5
SIX2Q9NPC8 AC083837.1-201ENST00000565297 2994 ntBASIC5.67□□□□□ -1.5
SIX2Q9NPC8 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.67□□□□□ -1.5
SIX2Q9NPC8 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
SIX2Q9NPC8 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.67□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms