Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AC009962.1-201ENST00000567327 3813 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.64□□□□□ -1.51
TRIM4Q9C037 LINC01923-203ENST00000456248 2528 ntTSL 2 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.64□□□□□ -1.51
TRIM4Q9C037 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC5.64□□□□□ -1.51
TRIM4Q9C037 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 MIR4500HG-201ENST00000436290 1675 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 OR13C1P-202ENST00000641378 2919 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 MYBPC1-209ENST00000547509 3749 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 TCEAL8-201ENST00000360000 1131 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 RNU1-150P-201ENST00000362491 162 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 RNA5SP211-201ENST00000365516 117 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 TCEAL8-202ENST00000372685 1222 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 RNA5SP156-201ENST00000410250 110 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 GAS5-202ENST00000414075 413 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 OR13Z1P-201ENST00000416141 834 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 BX284632.2-201ENST00000421091 399 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 CFL1P1-202ENST00000432948 411 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 AL512605.1-202ENST00000441919 381 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AL359955.2-201ENST00000445380 353 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AC012512.1-201ENST00000446594 718 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AL606490.1-201ENST00000452266 765 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 TPT1P1-201ENST00000458495 518 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 PDCL3P4-201ENST00000489621 720 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 ENPP7P11-201ENST00000505915 627 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 AC127381.1-201ENST00000555979 939 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 AC007431.2-201ENST00000577189 563 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 STARD6-202ENST00000577499 696 ntTSL 2 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 TEX26-AS1-204ENST00000585582 853 ntTSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 MIR6820-201ENST00000611508 62 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AC090510.2-201ENST00000617465 629 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AC099654.6-201ENST00000636487 512 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 RBMY1HP-201ENST00000382759 1389 ntBASIC5.63□□□□□ -1.51
TRIM4Q9C037 PCDH9-203ENST00000456367 5072 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.63□□□□□ -1.51
TRIM4Q9C037 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.63□□□□□ -1.51
TRIM4Q9C037 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM4Q9C037 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM4Q9C037 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM4Q9C037 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM4Q9C037 ABCC13-202ENST00000463099 3842 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 AC011755.1-201ENST00000623763 2049 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM4Q9C037 SNORA56-201ENST00000383966 129 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 RNA5SP487-201ENST00000410186 122 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 RPL35AP3-201ENST00000414680 288 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 ITGA9-AS1-202ENST00000420870 581 ntTSL 4 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 ITGA9-AS1-203ENST00000429532 702 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 SEPT14P12-201ENST00000442280 560 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 FTLP8-201ENST00000446770 267 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 AC073909.1-201ENST00000447112 999 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 GAS5-218ENST00000448718 565 ntTSL 2 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 AC016027.4-201ENST00000450866 277 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 RSU1P1-201ENST00000453416 441 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 MIS18A-AS1-201ENST00000453549 769 ntTSL 5 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 RPL35AP28-201ENST00000459730 331 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 RPL38P3-201ENST00000484463 213 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 OR7E157P-201ENST00000494376 911 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 AC006296.2-201ENST00000507932 764 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 AL671862.1-201ENST00000515851 349 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 RN7SKP288-201ENST00000516227 268 ntBASIC5.62□□□□□ -1.51
TRIM4Q9C037 AF181450.1-201ENST00000522980 410 ntTSL 3 BASIC5.62□□□□□ -1.51
TRIM4Q9C037 LGALS8-217ENST00000525042 903 ntTSL 1 (best) BASIC5.62□□□□□ -1.51
TRIM4Q9C037 AC008250.1-201ENST00000539874 522 ntTSL 3 BASIC5.62□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 88.5 ms