Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 AC008171.1-201ENST00000395058 200 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 RPL11P3-201ENST00000395256 523 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 TXNP2-201ENST00000443918 295 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 AL356390.1-201ENST00000455684 397 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 RN7SL188P-201ENST00000469842 285 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 RPL12P20-201ENST00000475538 479 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC010230.1-201ENST00000514115 443 ntTSL 3 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC020915.5-201ENST00000596836 964 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 DPY19L1P1-201ENST00000417811 2594 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 CNGA1-203ENST00000420489 2746 ntAPPRIS P3 TSL 2 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 Z97832.1-201ENST00000402490 328 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC122718.1-201ENST00000439448 744 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 FAM133DP-201ENST00000464802 691 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC098935.2-201ENST00000604222 466 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC021106.3-201ENST00000623925 531 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC011944.2-201ENST00000624440 683 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 AC073869.8-201ENST00000641806 335 ntBASIC8.64□□□□□ -1.03
IFT140Q96RY7 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
IFT140Q96RY7 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC8.64□□□□□ -1.03
IFT140Q96RY7 DNAJC6-201ENST00000263441 5916 ntAPPRIS ALT2 TSL 2 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 RPL37-201ENST00000274242 7686 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
IFT140Q96RY7 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC8.63□□□□□ -1.03
IFT140Q96RY7 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 BDNF-217ENST00000533131 3878 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
IFT140Q96RY7 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
IFT140Q96RY7 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
IFT140Q96RY7 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 SNORA70F-201ENST00000384142 135 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 MIR129-1-201ENST00000384972 72 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 AL592293.2-201ENST00000422292 996 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 OR10T1P-201ENST00000424327 947 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 RPS29P10-201ENST00000439197 166 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC8.63□□□□□ -1.03
IFT140Q96RY7 AC091180.1-201ENST00000462104 372 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 AC010326.1-201ENST00000462726 602 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 OR52A4P-201ENST00000472867 958 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 NIP7P2-201ENST00000485801 544 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 AK3P4-201ENST00000504283 583 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 AC006427.1-201ENST00000514359 712 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 OR4A17P-201ENST00000526032 904 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 NMNAT1P1-201ENST00000554095 876 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC8.63□□□□□ -1.03
IFT140Q96RY7 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
IFT140Q96RY7 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
IFT140Q96RY7 ZNF432-202ENST00000594154 4513 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 AC078842.2-201ENST00000447529 1835 ntTSL 2 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 AC010928.1-201ENST00000592477 1447 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 MAML2-202ENST00000618849 3154 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 ALB-214ENST00000509063 1911 ntTSL 5 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 AC104162.1-201ENST00000430831 2382 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 MAMDC2-AS1-201ENST00000377178 1504 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 SAMMSON-226ENST00000642089 1582 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 PRICKLE1-202ENST00000445766 4075 ntAPPRIS P1 TSL 5 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 PMP2-201ENST00000256103 3608 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 RPL12P43-201ENST00000420608 499 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 SLC9B1P4-201ENST00000421957 1288 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 AC073143.1-201ENST00000436316 395 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 RN7SKP92-201ENST00000517266 244 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 CCDC58P3-201ENST00000590792 430 ntBASIC8.62□□□□□ -1.03
IFT140Q96RY7 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC8.62□□□□□ -1.03
IFT140Q96RY7 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
IFT140Q96RY7 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC8.61□□□□□ -1.03
IFT140Q96RY7 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
IFT140Q96RY7 KAT6A-201ENST00000265713 9153 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
IFT140Q96RY7 NBPF20-205ENST00000622803 3689 ntTSL 5 BASIC8.61□□□□□ -1.03
IFT140Q96RY7 NUP214-202ENST00000411637 7538 ntAPPRIS ALT2 TSL 1 (best) BASIC8.61□□□□□ -1.03
IFT140Q96RY7 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
IFT140Q96RY7 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC8.61□□□□□ -1.03
IFT140Q96RY7 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC8.61□□□□□ -1.03
IFT140Q96RY7 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC8.61□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 97.7 ms