Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 ANKRD49-208ENST00000544253 3002 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 RNA5SP46-201ENST00000362370 120 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AL031985.1-201ENST00000392713 418 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC002504.1-201ENST00000438281 691 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 AL450996.1-201ENST00000445574 1202 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 HMGN1P36-201ENST00000446623 298 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 AL596266.1-201ENST00000448132 400 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 SEC22A-207ENST00000481965 673 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 IGHVIII-76-1-201ENST00000523776 286 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC234775.3-201ENST00000564612 656 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC010547.6-201ENST00000571789 193 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 AL157938.2-202ENST00000588378 875 ntTSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 HCG18-243ENST00000602498 327 ntTSL 3 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC008115.3-201ENST00000614874 549 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 AC127024.6-201ENST00000621598 424 ntBASIC4.91□□□□□ -1.62
SKA3Q8IX90 POU2F2-219ENST00000625670 371 ntTSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 CDH18-210ENST00000511273 2318 ntTSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 KIAA0391-209ENST00000604948 1706 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.91□□□□□ -1.62
SKA3Q8IX90 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 SEC24D-211ENST00000511481 2626 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SKA3Q8IX90 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.9□□□□□ -1.62
SKA3Q8IX90 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC4.9□□□□□ -1.62
SKA3Q8IX90 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.9□□□□□ -1.62
SKA3Q8IX90 ESRRG-204ENST00000361525 5363 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
SKA3Q8IX90 LRRC8B-201ENST00000330947 7593 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.62
SKA3Q8IX90 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.9□□□□□ -1.62
SKA3Q8IX90 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.9□□□□□ -1.62
SKA3Q8IX90 MAP3K2-201ENST00000344908 2135 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SKA3Q8IX90 POU2F1-202ENST00000367862 14038 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
SKA3Q8IX90 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SKA3Q8IX90 TMSB4XP4-201ENST00000323496 618 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 CLECL1-201ENST00000327839 670 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SKA3Q8IX90 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SKA3Q8IX90 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SKA3Q8IX90 SPINK14-201ENST00000356972 294 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SKA3Q8IX90 CCL7-202ENST00000394627 696 ntTSL 3 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC012512.1-201ENST00000446594 718 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 MTND4LP12-201ENST00000448237 295 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 RPS23P9-201ENST00000448848 438 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AL137001.1-201ENST00000450212 199 ntTSL 3 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 SEPT7P3-201ENST00000455017 621 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 SNORD125-201ENST00000459538 96 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 ATP5LP5-201ENST00000483050 299 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 RPS17P5-201ENST00000498293 408 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC008517.1-201ENST00000502383 585 ntTSL 4 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC138866.2-201ENST00000508650 584 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 MINCR-206ENST00000524335 499 ntTSL 2 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AL049872.1-201ENST00000556323 322 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 SPINK14-202ENST00000562793 157 ntTSL 5 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AL390726.5-202ENST00000564800 256 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 MIR4505-201ENST00000582238 73 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 RN7SL787P-201ENST00000613000 284 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC025574.2-201ENST00000615621 514 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC099654.6-201ENST00000636487 512 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 AC233968.1-201ENST00000611212 1300 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 MT-RNR2-201ENST00000387347 1559 ntBASIC4.9□□□□□ -1.63
SKA3Q8IX90 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC4.9□□□□□ -1.63
SKA3Q8IX90 CASC17-201ENST00000569074 2059 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SKA3Q8IX90 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms