Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AL355355.1-201ENST00000442900 793 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC6.27□□□□□ -1.41
USP39Q53GS9 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 NAP1L1P3-201ENST00000462291 880 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC073288.1-201ENST00000466291 469 ntTSL 3 BASIC6.27□□□□□ -1.41
USP39Q53GS9 RN7SL717P-201ENST00000478343 297 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 HMGB1P38-201ENST00000490557 577 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 SETP21-201ENST00000514799 892 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 RNA5SP438-201ENST00000516561 112 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 NRON-201ENST00000517270 370 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC027308.1-201ENST00000517993 110 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 AP002370.2-201ENST00000531424 545 ntTSL 3 BASIC6.27□□□□□ -1.41
USP39Q53GS9 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC6.27□□□□□ -1.41
USP39Q53GS9 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC6.27□□□□□ -1.41
USP39Q53GS9 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC6.27□□□□□ -1.41
USP39Q53GS9 VN1R78P-201ENST00000597393 564 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AL158042.1-201ENST00000605338 460 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC124016.2-201ENST00000610058 665 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 RNU6-1192P-201ENST00000612197 107 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AL392048.1-201ENST00000613946 534 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 MIR6826-201ENST00000617808 98 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 RNU6-489P-201ENST00000618289 107 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 MIR7159-201ENST00000620587 66 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC105105.5-201ENST00000622635 1294 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC092608.3-201ENST00000625017 386 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 AC073488.3-201ENST00000631611 778 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 DDAH1-206ENST00000633113 703 ntTSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 LYRM2-208ENST00000523377 5353 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 MTND4P26-201ENST00000415971 1359 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 CREM-217ENST00000439705 2306 ntTSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC6.27□□□□□ -1.41
USP39Q53GS9 ZNF283-203ENST00000588797 2428 ntTSL 2 BASIC6.27□□□□□ -1.41
USP39Q53GS9 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 CLEC4E-201ENST00000299663 2159 ntAPPRIS P1 TSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 RNF19BPY-201ENST00000458209 1550 ntBASIC6.27□□□□□ -1.41
USP39Q53GS9 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.27□□□□□ -1.41
USP39Q53GS9 AXDND1-201ENST00000367618 3642 ntAPPRIS P2 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 TOPORSLP1-201ENST00000467693 2102 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 ADAM18-206ENST00000520772 1429 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 ZNF610-202ENST00000327920 1855 ntAPPRIS P3 TSL 2 BASIC6.26□□□□□ -1.41
USP39Q53GS9 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 ADAM20-201ENST00000256389 2795 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 DNHD1-201ENST00000254579 14862 ntAPPRIS P1 TSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 BANK1-206ENST00000504592 3544 ntTSL 2 BASIC6.26□□□□□ -1.41
USP39Q53GS9 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC6.26□□□□□ -1.41
USP39Q53GS9 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 Y_RNA.169-201ENST00000363745 96 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 RNU6-40P-201ENST00000384254 107 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 MIR513B-201ENST00000385136 84 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 RNU6-298P-201ENST00000390888 96 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 RNU11-6P-201ENST00000391127 133 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AP003170.5-201ENST00000397185 335 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 FABP12P1-201ENST00000401911 322 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AL132875.1-201ENST00000403623 949 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AL096800.1-201ENST00000405326 893 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC245096.1-201ENST00000413104 546 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 RPS24P7-201ENST00000416921 246 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AF064858.3-201ENST00000419664 509 ntTSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 AL353608.2-201ENST00000425587 340 ntTSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 RPS7P14-201ENST00000426405 583 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 BRWD1P3-201ENST00000428816 390 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 CR769776.1-201ENST00000441254 787 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 MORF4-201ENST00000447135 971 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC004022.1-201ENST00000447766 1066 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 NPM1P49-201ENST00000448027 714 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC005077.1-201ENST00000449226 375 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC6.26□□□□□ -1.41
USP39Q53GS9 ZNF736P5Y-201ENST00000451173 805 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC6.26□□□□□ -1.41
USP39Q53GS9 RPL32P14-201ENST00000463196 378 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC104411.1-201ENST00000480817 320 ntTSL 3 BASIC6.26□□□□□ -1.41
USP39Q53GS9 SYT14P1-201ENST00000481459 721 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 EIF1P7-201ENST00000487533 337 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 RPL17P2-201ENST00000491913 451 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC104803.1-201ENST00000506917 529 ntTSL 3 BASIC6.26□□□□□ -1.41
USP39Q53GS9 AC109361.2-202ENST00000512514 483 ntTSL 3 BASIC6.26□□□□□ -1.41
USP39Q53GS9 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC6.26□□□□□ -1.41
USP39Q53GS9 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC6.26□□□□□ -1.41
USP39Q53GS9 SCARNA18.1-201ENST00000516330 83 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 RNA5SP434-201ENST00000516647 121 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 IGHVIII-67-4-201ENST00000524281 296 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 MITF-217ENST00000531774 1074 ntTSL 1 (best) BASIC6.26□□□□□ -1.41
USP39Q53GS9 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.26□□□□□ -1.41
USP39Q53GS9 ANKRD49-206ENST00000540349 573 ntTSL 4 BASIC6.26□□□□□ -1.41
USP39Q53GS9 AC073916.1-201ENST00000545095 130 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AC009094.1-201ENST00000564443 426 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 NBR2-204ENST00000587322 63 ntBASIC6.26□□□□□ -1.41
USP39Q53GS9 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC6.26□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms