Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC016583.1-201ENST00000624221 2431 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC009501.3-201ENST00000605001 1352 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 F13B-201ENST00000367412 2217 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 ZNF138-206ENST00000440598 2230 ntTSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 LMO3-201ENST00000261169 3810 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 SMR3B-201ENST00000304915 785 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 SDHAF3-201ENST00000360382 731 ntTSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 SNORA43.1-201ENST00000364863 140 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 RN7SKP292-201ENST00000365522 317 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 MIR23A-201ENST00000385245 73 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 EI24P3-201ENST00000399046 1062 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 ST13P16-201ENST00000401760 781 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 NUTM2A-AS1-203ENST00000413961 501 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 GNG5P5-201ENST00000420444 220 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 DEFA9P-201ENST00000433042 285 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 MTND2P21-201ENST00000436242 1042 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 PTMAP6-201ENST00000439110 327 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 ARL5AP3-201ENST00000439327 386 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL645936.1-201ENST00000441979 518 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC009963.4-201ENST00000448535 339 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 MTND2P39-201ENST00000457230 764 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 RPS27AP2-201ENST00000457576 465 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 RN7SL369P-201ENST00000477138 299 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 EFCAB10-203ENST00000480514 740 ntAPPRIS ALT1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC093270.2-201ENST00000486157 792 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 TRBV5-2-201ENST00000489095 273 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 GM2AP2-201ENST00000491764 562 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC025768.1-201ENST00000510057 267 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 OR5H7P-201ENST00000514084 930 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 APPL2-203ENST00000546731 684 ntTSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 LINC01146-207ENST00000557339 397 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC092332.1-201ENST00000563684 829 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 MIR3691-201ENST00000578066 90 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL157938.2-208ENST00000590461 877 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 MIR132-201ENST00000591554 101 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC006115.2-201ENST00000596823 202 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC004921.1-201ENST00000608884 733 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL355974.3-201ENST00000617383 467 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL731566.2-201ENST00000618971 317 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 ZNHIT3-208ENST00000619730 926 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC015722.2-201ENST00000622210 551 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC079298.2-201ENST00000623885 459 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 LINC01002-237ENST00000634025 555 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 OR7A1P-202ENST00000641542 1158 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 SPAM1-201ENST00000223028 2007 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 RASGRP1-203ENST00000450598 2296 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC098798.1-201ENST00000503998 1447 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 USP40-202ENST00000409945 1946 ntTSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 TEK-205ENST00000615002 4666 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AL161756.3-201ENST00000641216 2071 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 HMBOX1-206ENST00000519047 1551 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 EEF1A1P30-201ENST00000429708 1315 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 KYNUP3-201ENST00000574386 1341 ntBASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
PDLIM3Q53GG5 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 MAPK10-370ENST00000641943 4117 ntAPPRIS P2 BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 SLC1A3-201ENST00000265113 4170 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 OR52B3P-201ENST00000314715 928 ntBASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 GAPDHP24-201ENST00000328713 983 ntBASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 RNA5SP105-201ENST00000391123 113 ntBASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 PEX12P1-201ENST00000400284 1048 ntBASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 RN7SKP166-201ENST00000410812 305 ntBASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 SDHDP6-201ENST00000414693 480 ntBASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 AC107079.1-201ENST00000416509 669 ntTSL 2 BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
PDLIM3Q53GG5 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms