Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 PHBP2-201ENST00000532859 806 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC6.44□□□□□ -1.38
RNF4P78317 AC025265.2-201ENST00000551905 478 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 AC037479.1-201ENST00000558361 625 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC020891.2-201ENST00000559672 776 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 NR2F2-AS1-208ENST00000560395 441 ntTSL 5 BASIC6.44□□□□□ -1.38
RNF4P78317 AC090283.1-201ENST00000582101 265 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AC068418.1-201ENST00000582990 404 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC6.44□□□□□ -1.38
RNF4P78317 AL136084.2-214ENST00000587726 716 ntTSL 5 BASIC6.44□□□□□ -1.38
RNF4P78317 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AP000403.1-201ENST00000603349 851 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC007255.2-201ENST00000604053 631 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AC004890.3-201ENST00000605566 1095 ntBASIC6.44□□□□□ -1.38
RNF4P78317 MIR6070-201ENST00000613967 103 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AL353651.2-201ENST00000635706 559 ntTSL 5 BASIC6.44□□□□□ -1.38
RNF4P78317 RBPJ-214ENST00000507561 1689 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AL137058.3-201ENST00000624531 3099 ntBASIC6.44□□□□□ -1.38
RNF4P78317 AL671511.1-201ENST00000425033 3458 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 FCF1-201ENST00000341162 4341 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AC007938.1-201ENST00000562524 2902 ntBASIC6.44□□□□□ -1.38
RNF4P78317 HMGCS2-204ENST00000544913 1925 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 AL353743.4-201ENST00000422653 1547 ntBASIC6.44□□□□□ -1.38
RNF4P78317 LINC01559-201ENST00000318426 2750 ntTSL 2 BASIC6.44□□□□□ -1.38
RNF4P78317 TBC1D32-201ENST00000275159 4431 ntAPPRIS ALT2 TSL 5 BASIC6.44□□□□□ -1.38
RNF4P78317 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC6.44□□□□□ -1.38
RNF4P78317 STON2-206ENST00000555447 4302 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
RNF4P78317 CNTRL-207ENST00000373855 7660 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
RNF4P78317 ZFY-207ENST00000625061 2273 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 OR10G4-202ENST00000641521 3623 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
RNF4P78317 BROX-201ENST00000340934 4124 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 MUC5AC-201ENST00000621226 17448 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
RNF4P78317 WBP11P1-201ENST00000562560 1931 ntBASIC6.43□□□□□ -1.38
RNF4P78317 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 ADGRE1-203ENST00000381404 3056 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 HTR2A-203ENST00000543956 4689 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 ACOT13-201ENST00000230048 4047 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC6.43□□□□□ -1.38
RNF4P78317 AL121657.1-201ENST00000327215 531 ntBASIC6.43□□□□□ -1.38
RNF4P78317 FUNDC2P3-201ENST00000334716 533 ntBASIC6.43□□□□□ -1.38
RNF4P78317 OR10D1P-201ENST00000355343 936 ntBASIC6.43□□□□□ -1.38
RNF4P78317 Y_RNA.408-201ENST00000383987 102 ntBASIC6.43□□□□□ -1.38
RNF4P78317 SNORA75-201ENST00000384158 137 ntBASIC6.43□□□□□ -1.38
RNF4P78317 SNORD65.1-201ENST00000390889 71 ntBASIC6.43□□□□□ -1.38
RNF4P78317 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 RNU2-66P-201ENST00000410650 161 ntBASIC6.43□□□□□ -1.38
RNF4P78317 MTND1P21-201ENST00000412991 285 ntBASIC6.43□□□□□ -1.38
RNF4P78317 RPS15AP38-201ENST00000413110 372 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 AL353651.1-201ENST00000415629 355 ntTSL 5 BASIC6.43□□□□□ -1.38
RNF4P78317 EIF1P1-201ENST00000421436 341 ntBASIC6.43□□□□□ -1.38
RNF4P78317 LINC01359-202ENST00000436350 710 ntTSL 3 BASIC6.43□□□□□ -1.38
RNF4P78317 USP9YP22-201ENST00000438971 294 ntBASIC6.43□□□□□ -1.38
RNF4P78317 TCEA1P3-201ENST00000443005 880 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AL845321.1-201ENST00000444603 348 ntBASIC6.43□□□□□ -1.38
RNF4P78317 MTCO2P25-201ENST00000447065 681 ntBASIC6.43□□□□□ -1.38
RNF4P78317 LIX1L-AS1-207ENST00000448561 347 ntTSL 3 BASIC6.43□□□□□ -1.38
RNF4P78317 AL157896.1-201ENST00000451617 790 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 DNAJC19P8-201ENST00000452887 259 ntBASIC6.43□□□□□ -1.38
RNF4P78317 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 AC135721.2-201ENST00000464237 300 ntBASIC6.43□□□□□ -1.38
RNF4P78317 ZNF286A-205ENST00000472486 827 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 AC116337.2-201ENST00000477662 156 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC6.43□□□□□ -1.38
RNF4P78317 SUB1-203ENST00000502897 562 ntAPPRIS P1 TSL 4 BASIC6.43□□□□□ -1.38
RNF4P78317 AC138853.1-201ENST00000503549 823 ntBASIC6.43□□□□□ -1.38
RNF4P78317 ATP1B1P1-201ENST00000509767 915 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AC006499.4-201ENST00000510947 694 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AC002401.2-201ENST00000511361 430 ntTSL 3 BASIC6.43□□□□□ -1.38
RNF4P78317 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 IGHV3-63-201ENST00000518422 341 ntBASIC6.43□□□□□ -1.38
RNF4P78317 EEF1B2P2-201ENST00000519625 676 ntBASIC6.43□□□□□ -1.38
RNF4P78317 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC6.43□□□□□ -1.38
RNF4P78317 OR4C2P-201ENST00000530855 1064 ntBASIC6.43□□□□□ -1.38
RNF4P78317 NXPE2P1-201ENST00000543705 726 ntBASIC6.43□□□□□ -1.38
RNF4P78317 LINC02308-201ENST00000555001 637 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 AL392023.2-202ENST00000555342 494 ntTSL 5 BASIC6.43□□□□□ -1.38
RNF4P78317 ALDH3A2-208ENST00000571163 590 ntTSL 5 BASIC6.43□□□□□ -1.38
RNF4P78317 AC005244.2-201ENST00000585228 718 ntTSL 3 BASIC6.43□□□□□ -1.38
RNF4P78317 AC097467.3-210ENST00000597939 705 ntTSL 5 BASIC6.43□□□□□ -1.38
RNF4P78317 AC125494.2-201ENST00000602431 657 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AL606834.2-201ENST00000602954 668 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AP003481.1-202ENST00000608214 503 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 AC244196.4-201ENST00000611787 392 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
RNF4P78317 5S_rRNA.23-201ENST00000612086 102 ntBASIC6.43□□□□□ -1.38
RNF4P78317 MIR6774-201ENST00000614651 70 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AL121873.1-201ENST00000616013 524 ntBASIC6.43□□□□□ -1.38
RNF4P78317 AC006840.1-201ENST00000623069 542 ntBASIC6.43□□□□□ -1.38
RNF4P78317 U6.107-201ENST00000637108 79 ntBASIC6.43□□□□□ -1.38
RNF4P78317 GUSBP1-205ENST00000607545 4157 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 FDFT1-222ENST00000538689 2289 ntTSL 2 BASIC6.43□□□□□ -1.38
RNF4P78317 DCAF13P3-201ENST00000561147 1334 ntBASIC6.43□□□□□ -1.38
RNF4P78317 NAV3-202ENST00000536525 7386 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
RNF4P78317 PEX13-201ENST00000295030 4470 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms