Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 RNU6-517P-201ENST00000384362 110 ntBASIC7.03□□□□□ -1.28
LIG3P49916 Y_RNA.553-201ENST00000384670 102 ntBASIC7.03□□□□□ -1.28
LIG3P49916 MIR99A-201ENST00000384906 81 ntBASIC7.03□□□□□ -1.28
LIG3P49916 P2RY10P2-201ENST00000416730 913 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC7.03□□□□□ -1.28
LIG3P49916 MTCO1P3-201ENST00000429327 192 ntBASIC7.03□□□□□ -1.28
LIG3P49916 MIR4435-2HG-206ENST00000432818 572 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 AC108051.1-201ENST00000435291 549 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG3P49916 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 AL604028.2-201ENST00000437848 788 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC7.03□□□□□ -1.28
LIG3P49916 AP000936.2-201ENST00000447151 681 ntBASIC7.03□□□□□ -1.28
LIG3P49916 SUN3-208ENST00000453192 801 ntTSL 5 BASIC7.03□□□□□ -1.28
LIG3P49916 ARL4AP1-201ENST00000503220 705 ntBASIC7.03□□□□□ -1.28
LIG3P49916 MTATP6P22-201ENST00000507369 598 ntBASIC7.03□□□□□ -1.28
LIG3P49916 RN7SKP11-201ENST00000517018 287 ntBASIC7.03□□□□□ -1.28
LIG3P49916 CARSP2-201ENST00000520688 277 ntBASIC7.03□□□□□ -1.28
LIG3P49916 HIGD1AP10-201ENST00000527837 282 ntBASIC7.03□□□□□ -1.28
LIG3P49916 PHBP2-201ENST00000532859 806 ntBASIC7.03□□□□□ -1.28
LIG3P49916 IAPP-204ENST00000539393 409 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
LIG3P49916 AC069240.2-201ENST00000550242 609 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC006362.1-201ENST00000567392 174 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC015908.3-202ENST00000579367 457 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG3P49916 BNIP3P26-201ENST00000600827 554 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC067773.1-201ENST00000603284 1094 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC091193.1-201ENST00000604640 448 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC022001.1-201ENST00000605193 268 ntBASIC7.03□□□□□ -1.28
LIG3P49916 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
LIG3P49916 AC099842.1-201ENST00000619919 596 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC008443.7-201ENST00000622195 246 ntBASIC7.03□□□□□ -1.28
LIG3P49916 AC007342.8-201ENST00000623278 678 ntBASIC7.03□□□□□ -1.28
LIG3P49916 LPAR6-201ENST00000345941 2428 ntAPPRIS P1 TSL 2 BASIC7.03□□□□□ -1.28
LIG3P49916 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 AC027279.4-201ENST00000624371 2072 ntBASIC7.03□□□□□ -1.28
LIG3P49916 IL13RA2-201ENST00000243213 1371 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 ZNF833P-201ENST00000424938 1494 ntBASIC7.03□□□□□ -1.28
LIG3P49916 DHRS9-205ENST00000432060 1652 ntTSL 2 BASIC7.03□□□□□ -1.28
LIG3P49916 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
LIG3P49916 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC7.02□□□□□ -1.28
LIG3P49916 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.28
LIG3P49916 TRG-AS1-201ENST00000629357 3645 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIG3P49916 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 ENSAP3-201ENST00000312710 333 ntBASIC7.02□□□□□ -1.29
LIG3P49916 OR6P1-201ENST00000334632 954 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
LIG3P49916 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 RNU6-1200P-201ENST00000384162 107 ntBASIC7.02□□□□□ -1.29
LIG3P49916 MT-TH-201ENST00000387441 69 ntBASIC7.02□□□□□ -1.29
LIG3P49916 SNORA26.8-201ENST00000391306 124 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AC093719.1-202ENST00000392735 373 ntBASIC7.02□□□□□ -1.29
LIG3P49916 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIG3P49916 NUCB1-AS1-201ENST00000416432 433 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 AC097717.1-228ENST00000417006 754 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 RPL17P17-201ENST00000419491 557 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 AL162734.1-201ENST00000432858 157 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 GTF2IP7-202ENST00000436677 309 ntBASIC7.02□□□□□ -1.29
LIG3P49916 HMGN1P6-201ENST00000438508 291 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AC114814.1-201ENST00000444926 691 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 AC005002.1-201ENST00000447458 540 ntBASIC7.02□□□□□ -1.29
LIG3P49916 MOB4-207ENST00000448447 1021 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 C1orf105-204ENST00000460397 462 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 RPL7P18-201ENST00000478965 734 ntBASIC7.02□□□□□ -1.29
LIG3P49916 HNRNPKP5-201ENST00000515300 253 ntBASIC7.02□□□□□ -1.29
LIG3P49916 RNU6-720P-201ENST00000516363 108 ntBASIC7.02□□□□□ -1.29
LIG3P49916 SNORA81.2-201ENST00000516868 170 ntBASIC7.02□□□□□ -1.29
LIG3P49916 SCARNA11.1-201ENST00000516918 132 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AC023632.1-201ENST00000518463 375 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AC084337.1-201ENST00000524809 686 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AP002004.1-202ENST00000528437 586 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 AC087623.1-201ENST00000533301 377 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 NR1H4-204ENST00000546380 565 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 AL356017.1-201ENST00000556796 594 ntTSL 4 BASIC7.02□□□□□ -1.29
LIG3P49916 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 AC010531.4-201ENST00000570286 576 ntTSL 4 BASIC7.02□□□□□ -1.29
LIG3P49916 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC7.02□□□□□ -1.29
LIG3P49916 STRADA-207ENST00000578008 1153 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 MIR3611-201ENST00000584484 83 ntBASIC7.02□□□□□ -1.29
LIG3P49916 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC7.02□□□□□ -1.29
LIG3P49916 AC011447.2-201ENST00000592921 283 ntBASIC7.02□□□□□ -1.29
LIG3P49916 RPS27AP19-201ENST00000597285 458 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AC097505.1-201ENST00000610199 565 ntBASIC7.02□□□□□ -1.29
LIG3P49916 AC015540.1-201ENST00000615828 501 ntBASIC7.02□□□□□ -1.29
LIG3P49916 CNTNAP3P1-201ENST00000616657 906 ntBASIC7.02□□□□□ -1.29
LIG3P49916 STMN1P1-201ENST00000617809 440 ntBASIC7.02□□□□□ -1.29
LIG3P49916 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIG3P49916 AC131009.3-201ENST00000621809 287 ntBASIC7.02□□□□□ -1.29
LIG3P49916 LINC00466-206ENST00000634576 1279 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 ABLIM1-207ENST00000392955 7408 ntTSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 AC005539.1-201ENST00000443768 1479 ntBASIC7.02□□□□□ -1.29
LIG3P49916 FAM111B-201ENST00000343597 3488 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
LIG3P49916 SGIP1-201ENST00000237247 3997 ntAPPRIS ALT2 TSL 5 BASIC7.02□□□□□ -1.29
LIG3P49916 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 75.7 ms