Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 OR5AN1-203ENST00000641998 7647 ntAPPRIS P1 BASIC5.12□□□□□ -1.59
SDC1P18827 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SDC1P18827 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC5.12□□□□□ -1.59
SDC1P18827 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SDC1P18827 EEF1A1-210ENST00000610520 3447 ntTSL 5 BASIC5.11□□□□□ -1.59
SDC1P18827 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.11□□□□□ -1.59
SDC1P18827 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC5.11□□□□□ -1.59
SDC1P18827 AP001284.1-201ENST00000528393 2118 ntBASIC5.11□□□□□ -1.59
SDC1P18827 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 FAM162A-201ENST00000232125 801 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 CLEC4A-203ENST00000352620 615 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 ZCCHC6-203ENST00000375948 958 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.11□□□□□ -1.59
SDC1P18827 NACAP7-201ENST00000407371 609 ntBASIC5.11□□□□□ -1.59
SDC1P18827 GABARAPL3-201ENST00000412799 354 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC009468.1-201ENST00000412800 437 ntTSL 3 BASIC5.11□□□□□ -1.59
SDC1P18827 RPL12P9-201ENST00000412942 488 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC5.11□□□□□ -1.59
SDC1P18827 TRGV7-201ENST00000427089 353 ntBASIC5.11□□□□□ -1.59
SDC1P18827 LINC02532-206ENST00000433965 570 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.11□□□□□ -1.59
SDC1P18827 GSTM5P1-201ENST00000434751 660 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC5.11□□□□□ -1.59
SDC1P18827 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 PRPF38AP1-201ENST00000451976 933 ntBASIC5.11□□□□□ -1.59
SDC1P18827 RPS26P24-201ENST00000497656 331 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.11□□□□□ -1.59
SDC1P18827 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.11□□□□□ -1.59
SDC1P18827 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.11□□□□□ -1.59
SDC1P18827 HMGB1P44-201ENST00000508597 572 ntBASIC5.11□□□□□ -1.59
SDC1P18827 SNORD46.2-201ENST00000516021 102 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC078878.1-201ENST00000539832 958 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC012555.2-201ENST00000549448 413 ntTSL 3 BASIC5.11□□□□□ -1.59
SDC1P18827 AC040958.1-201ENST00000561102 201 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC139099.3-202ENST00000574856 439 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 MIR4433B-201ENST00000581329 102 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC005726.4-201ENST00000582858 458 ntBASIC5.11□□□□□ -1.59
SDC1P18827 AC005828.3-201ENST00000583552 591 ntTSL 5 BASIC5.11□□□□□ -1.59
SDC1P18827 LINC01676-204ENST00000595309 871 ntTSL 5 BASIC5.11□□□□□ -1.59
SDC1P18827 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC5.11□□□□□ -1.59
SDC1P18827 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 TCP11X1-202ENST00000622971 1372 ntBASIC5.11□□□□□ -1.59
SDC1P18827 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.11□□□□□ -1.59
SDC1P18827 SH3BGRL-201ENST00000373212 1923 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 LINC01538-201ENST00000588074 2408 ntTSL 1 (best) BASIC5.11□□□□□ -1.59
SDC1P18827 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.1□□□□□ -1.59
SDC1P18827 LINC00474-201ENST00000374014 769 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SDC1P18827 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SDC1P18827 RNA5SP122-201ENST00000384457 108 ntBASIC5.1□□□□□ -1.59
SDC1P18827 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 Z93019.1-201ENST00000416450 973 ntBASIC5.1□□□□□ -1.59
SDC1P18827 TNPO1P1-201ENST00000423641 1138 ntBASIC5.1□□□□□ -1.59
SDC1P18827 PRUNEP1-201ENST00000425846 705 ntBASIC5.1□□□□□ -1.59
SDC1P18827 AC002504.1-201ENST00000438281 691 ntBASIC5.1□□□□□ -1.59
SDC1P18827 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 CDY11P-201ENST00000447168 1651 ntBASIC5.1□□□□□ -1.59
SDC1P18827 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 GAPDHP14-201ENST00000450472 937 ntBASIC5.1□□□□□ -1.59
SDC1P18827 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.1□□□□□ -1.59
SDC1P18827 TOPORSLP1-201ENST00000467693 2102 ntBASIC5.1□□□□□ -1.59
SDC1P18827 CBX1P5-201ENST00000475330 559 ntBASIC5.1□□□□□ -1.59
SDC1P18827 AC058823.1-201ENST00000485315 474 ntBASIC5.1□□□□□ -1.59
SDC1P18827 OR2A3P-201ENST00000493774 953 ntBASIC5.1□□□□□ -1.59
SDC1P18827 PSMA2P2-201ENST00000504319 686 ntBASIC5.1□□□□□ -1.59
SDC1P18827 AC113398.2-201ENST00000507630 558 ntBASIC5.1□□□□□ -1.59
SDC1P18827 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 RN7SKP99-201ENST00000517028 307 ntBASIC5.1□□□□□ -1.59
SDC1P18827 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC5.1□□□□□ -1.59
SDC1P18827 TRAV11-201ENST00000539512 339 ntBASIC5.1□□□□□ -1.59
SDC1P18827 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.1□□□□□ -1.59
SDC1P18827 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC5.1□□□□□ -1.59
SDC1P18827 AC005757.1-201ENST00000591432 472 ntTSL 4 BASIC5.1□□□□□ -1.59
SDC1P18827 PROX1-AS1-219ENST00000610094 791 ntTSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC5.1□□□□□ -1.59
SDC1P18827 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC5.1□□□□□ -1.59
SDC1P18827 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC5.1□□□□□ -1.59
SDC1P18827 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC5.1□□□□□ -1.59
SDC1P18827 ZNF382-201ENST00000292928 8329 ntAPPRIS P3 TSL 1 (best) BASIC5.1□□□□□ -1.59
SDC1P18827 PLCXD3-201ENST00000328457 7538 ntAPPRIS P1 TSL 5 BASIC5.1□□□□□ -1.59
SDC1P18827 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC5.1□□□□□ -1.59
SDC1P18827 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.1□□□□□ -1.59
SDC1P18827 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.09□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 105.8 ms