Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
HMGA1P17096 RN7SKP17-201ENST00000411242 351 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.47□□□□□ -1.53
HMGA1P17096 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.47□□□□□ -1.53
HMGA1P17096 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
HMGA1P17096 AC124944.2-201ENST00000429866 1242 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC5.47□□□□□ -1.53
HMGA1P17096 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC5.47□□□□□ -1.53
HMGA1P17096 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC5.47□□□□□ -1.53
HMGA1P17096 NOP56P2-201ENST00000447491 769 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC002075.1-201ENST00000457396 676 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 HMGN1P9-201ENST00000515212 298 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 HNRNPCP1-201ENST00000556181 766 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.47□□□□□ -1.53
HMGA1P17096 MIR4700-201ENST00000578311 74 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC011840.5-201ENST00000582125 771 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC010531.5-201ENST00000602779 450 ntTSL 3 BASIC5.47□□□□□ -1.53
HMGA1P17096 AC116651.1-201ENST00000609724 556 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC093799.2-201ENST00000610062 578 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC021422.1-201ENST00000621212 473 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC135068.12-201ENST00000637370 931 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 AC000095.2-202ENST00000637415 154 ntBASIC5.47□□□□□ -1.53
HMGA1P17096 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
HMGA1P17096 PCDH15-202ENST00000361849 7017 ntTSL 5 BASIC5.47□□□□□ -1.53
HMGA1P17096 PCDH15-205ENST00000373957 7032 ntTSL 5 BASIC5.47□□□□□ -1.53
HMGA1P17096 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC5.47□□□□□ -1.53
HMGA1P17096 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
HMGA1P17096 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.47□□□□□ -1.53
HMGA1P17096 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC5.47□□□□□ -1.53
HMGA1P17096 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.47□□□□□ -1.53
HMGA1P17096 ZC3H12C-201ENST00000278590 8807 ntTSL 2 BASIC5.47□□□□□ -1.53
HMGA1P17096 NAP1L1-204ENST00000535020 1686 ntTSL 2 BASIC5.47□□□□□ -1.53
HMGA1P17096 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.53
HMGA1P17096 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.54
HMGA1P17096 DNAH17-201ENST00000389840 13723 ntAPPRIS P5 TSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 AC079298.1-201ENST00000625026 1619 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.46□□□□□ -1.54
HMGA1P17096 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 SVBP-202ENST00000372522 650 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
HMGA1P17096 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGA1P17096 CHMP1B2P-201ENST00000399581 597 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 AL138831.1-201ENST00000415144 209 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGA1P17096 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC5.46□□□□□ -1.54
HMGA1P17096 AL133482.1-201ENST00000415988 498 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 IL23R-203ENST00000425614 1295 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 AC017019.1-201ENST00000426129 261 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 DNAJB5P1-201ENST00000454004 806 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 AP000797.2-201ENST00000475768 606 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 RPL37AP8-201ENST00000494116 276 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 AC006427.1-201ENST00000514359 712 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 SEPT10P1-201ENST00000517342 1162 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 OR8Q1P-201ENST00000526467 655 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 EIF4A2P5-201ENST00000529914 499 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 AC007922.3-201ENST00000581648 543 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGA1P17096 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGA1P17096 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 AC025857.2-201ENST00000602711 238 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 AL049539.1-201ENST00000611964 459 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 AL445528.2-201ENST00000620582 470 ntBASIC5.46□□□□□ -1.54
HMGA1P17096 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.46□□□□□ -1.54
HMGA1P17096 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.46□□□□□ -1.54
HMGA1P17096 CLMN-201ENST00000298912 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
HMGA1P17096 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 LINC00343-202ENST00000415294 1320 ntTSL 5 BASIC5.46□□□□□ -1.54
HMGA1P17096 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
HMGA1P17096 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC5.46□□□□□ -1.54
HMGA1P17096 CACNA1E-204ENST00000367567 14757 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
HMGA1P17096 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.45□□□□□ -1.54
HMGA1P17096 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
HMGA1P17096 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.45□□□□□ -1.54
HMGA1P17096 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC5.45□□□□□ -1.54
HMGA1P17096 TGFBR1-208ENST00000550253 1538 ntTSL 2 BASIC5.45□□□□□ -1.54
HMGA1P17096 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGA1P17096 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.45□□□□□ -1.54
HMGA1P17096 RNA5SP123-201ENST00000363244 119 ntBASIC5.45□□□□□ -1.54
HMGA1P17096 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
HMGA1P17096 MIR585-201ENST00000384887 94 ntBASIC5.45□□□□□ -1.54
HMGA1P17096 AL078599.1-201ENST00000402075 293 ntBASIC5.45□□□□□ -1.54
HMGA1P17096 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC5.45□□□□□ -1.54
HMGA1P17096 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.45□□□□□ -1.54
HMGA1P17096 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.45□□□□□ -1.54
HMGA1P17096 RHOT1P3-201ENST00000436571 331 ntBASIC5.45□□□□□ -1.54
HMGA1P17096 RPS29P10-201ENST00000439197 166 ntBASIC5.45□□□□□ -1.54
HMGA1P17096 KNOP1P3-201ENST00000446933 426 ntBASIC5.45□□□□□ -1.54
HMGA1P17096 HIGD1AP8-201ENST00000453927 274 ntBASIC5.45□□□□□ -1.54
HMGA1P17096 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.45□□□□□ -1.54
HMGA1P17096 AL158825.2-201ENST00000455336 670 ntTSL 5 BASIC5.45□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 120.7 ms