Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 AL391987.1-201ENST00000441025 200 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AL445466.1-201ENST00000448432 357 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC010976.1-211ENST00000454503 644 ntTSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC112187.1-201ENST00000455837 479 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 snoU109.3-201ENST00000459477 145 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 HAX1-208ENST00000483970 1151 ntTSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC083795.1-201ENST00000491760 320 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 FO393419.2-201ENST00000492975 428 ntTSL 3 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 DUBR-205ENST00000495228 411 ntTSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC090058.1-201ENST00000498788 435 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 PCNAP1-201ENST00000505363 709 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 NAMPTP2-201ENST00000505629 1115 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC010260.1-201ENST00000511484 664 ntTSL 3 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 MTCO3P27-201ENST00000514397 196 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC097486.1-201ENST00000515331 210 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 LINCR-0001-202ENST00000518098 524 ntTSL 4 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC060775.1-201ENST00000518241 520 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AP001893.1-201ENST00000532866 362 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 OSBPL9P3-201ENST00000534523 595 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 ZKSCAN7P1-201ENST00000543668 673 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 NANOGNBP2-201ENST00000544753 553 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC008126.1-201ENST00000549019 480 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC106730.2-201ENST00000566641 540 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AL136131.3-201ENST00000607600 188 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 MIR6809-201ENST00000612189 116 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC025016.1-201ENST00000616746 682 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 KLRC2-206ENST00000619500 883 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AL445528.2-201ENST00000620582 470 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AL136228.1-201ENST00000622221 319 ntBASIC6.09□□□□□ -1.43
DKK3Q9UBP4 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 SUPT3H-206ENST00000637763 498 ntTSL 3 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
DKK3Q9UBP4 ATP2C1-203ENST00000422190 3386 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
DKK3Q9UBP4 AC119674.1-202ENST00000641333 1860 ntBASIC6.09□□□□□ -1.44
DKK3Q9UBP4 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC6.09□□□□□ -1.44
DKK3Q9UBP4 MYPN-202ENST00000358913 6013 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC012254.3-201ENST00000591183 2117 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC016583.1-201ENST00000624221 2431 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 ZNF33A-202ENST00000374618 6122 ntTSL 4 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 TMEM67-205ENST00000453321 4651 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 MLLT10-217ENST00000631589 4955 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 SLC9B1P1-201ENST00000331172 1337 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 VEZT-204ENST00000436874 4562 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 FBXW12-201ENST00000296438 1647 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 BEND2-201ENST00000380030 1938 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 PRSS37-201ENST00000350549 1189 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 RN7SKP74-201ENST00000362849 309 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 RNU1-146P-201ENST00000364015 165 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 CFHR2-201ENST00000367415 1059 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 DAOA-202ENST00000375936 742 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 TMA16P2-201ENST00000413187 601 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 RPL35AP3-201ENST00000414680 288 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC096644.3-201ENST00000416788 338 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 VPS26BP1-201ENST00000417155 755 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC066692.1-201ENST00000421721 457 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 NAALADL2-AS2-201ENST00000424690 1038 ntTSL 5 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 MIR646HG-202ENST00000426753 651 ntTSL 2 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 VTI1BP4-201ENST00000427516 527 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AL450384.1-201ENST00000433526 413 ntTSL 2 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 VN1R110P-201ENST00000438988 971 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC108488.1-202ENST00000439547 482 ntTSL 3 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 NPM1P19-201ENST00000450070 712 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 RPS26P41-201ENST00000450370 284 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AF129075.1-201ENST00000457162 794 ntTSL 3 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 RN7SL352P-201ENST00000466002 277 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC023245.1-201ENST00000468501 517 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC090543.1-201ENST00000492168 485 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 ENSA-211ENST00000503345 793 ntTSL 3 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC008945.1-201ENST00000505144 499 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 SEC11B-201ENST00000518383 499 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AP003355.1-201ENST00000518956 587 ntBASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC103726.2-201ENST00000523318 411 ntTSL 2 BASIC6.08□□□□□ -1.44
DKK3Q9UBP4 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 167.9 ms