Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 IL7R-201ENST00000303115 4626 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 NRCAM-210ENST00000425651 3915 ntAPPRIS ALT2 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC106870.1-201ENST00000359823 200 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC083799.1-201ENST00000366451 910 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 MIR937-201ENST00000401271 86 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 CYCSP12-201ENST00000437729 300 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 GAPDHP58-201ENST00000438477 1006 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 XKRYP6-201ENST00000440468 1116 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 XKRYP3-201ENST00000442113 1116 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC019185.1-201ENST00000442718 389 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 SBDSP1-204ENST00000453858 737 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 LINC00518-204ENST00000491317 1228 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC024558.1-201ENST00000505008 528 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AL133372.2-203ENST00000508469 922 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 CDC42P3-201ENST00000518493 633 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC084024.3-201ENST00000520598 562 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC078899.1-201ENST00000521432 1185 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 HSPE1P2-201ENST00000554777 306 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 WDR61-205ENST00000558459 884 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC013652.1-202ENST00000561058 570 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC113418.1-201ENST00000569928 517 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC007333.2-201ENST00000569998 559 ntTSL 4 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC010547.7-201ENST00000570323 333 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 BNIP3P32-201ENST00000600015 554 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC012467.1-201ENST00000607740 256 ntBASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC239809.3-208ENST00000611452 531 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 ZNF227-208ENST00000589005 2943 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 SLC26A3-201ENST00000340010 2863 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 TDRD5-202ENST00000367614 3632 ntAPPRIS P3 TSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
CCDC3Q9BQI4 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 MRRFP1-201ENST00000435941 1675 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 ICE2P1-201ENST00000512800 1849 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 TEX36-201ENST00000368821 922 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RNU6-891P-201ENST00000384280 111 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 MIR223-201ENST00000385204 110 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RPS6P23-201ENST00000413224 722 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 FAM204CP-201ENST00000424489 642 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 NANOGP4-201ENST00000427230 913 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RPL7L1P9-201ENST00000431298 745 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC006335.2-201ENST00000437993 330 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC008269.1-201ENST00000438070 646 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 VDAC2P4-201ENST00000452925 711 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RSU1P1-201ENST00000453416 441 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RN7SL727P-201ENST00000482164 296 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RPS4XP1-201ENST00000482189 787 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 CR383656.1-201ENST00000484916 377 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC117386.2-203ENST00000489690 557 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 DUTP1-201ENST00000493631 470 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC093763.2-201ENST00000505334 1223 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 LINC01332-201ENST00000506612 502 ntTSL 4 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 RPS3A-210ENST00000512690 845 ntTSL 3 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC109830.1-202ENST00000515491 860 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 HAUS8P1-201ENST00000549005 542 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC090518.1-202ENST00000568246 578 ntTSL 4 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AL133481.2-203ENST00000607558 139 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC037198.3-201ENST00000616754 526 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AC136428.4-201ENST00000634254 1155 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 SAMMSON-209ENST00000641222 1100 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AL359955.1-201ENST00000455242 3275 ntBASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 UGT2A2-202ENST00000604629 1676 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
CCDC3Q9BQI4 AL022311.1-201ENST00000623726 19416 ntBASIC5.46□□□□□ -1.53
CCDC3Q9BQI4 VWC2L-201ENST00000312504 4610 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
CCDC3Q9BQI4 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 84.2 ms