Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 ABCC9-204ENST00000538350 2672 ntTSL 2 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 ALB-202ENST00000401494 1659 ntTSL 5 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AL162726.3-201ENST00000637606 1301 ntTSL 5 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 ZNF440-201ENST00000304060 4189 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 RBM22-202ENST00000447771 1386 ntTSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 CSMD3-204ENST00000455883 12485 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 CASC19-238ENST00000641523 1558 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC097063.1-201ENST00000426714 1797 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 EBF1-211ENST00000622875 4430 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 RNA5SP510-201ENST00000364697 99 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 SNORA27.3-201ENST00000364937 134 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 LIX1L-AS1-201ENST00000366105 377 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC007068.1-201ENST00000396690 844 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AMZ2P2-201ENST00000406819 1057 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 UBE2V1P15-201ENST00000407776 448 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 CBX1P3-201ENST00000413296 527 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 RPSAP35-201ENST00000413753 818 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC013470.3-201ENST00000420252 1194 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 RPS3P2-201ENST00000421346 701 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 DPYD-AS2-201ENST00000422259 788 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 MTCO1P51-201ENST00000427672 1060 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 MTCO1P45-201ENST00000431457 267 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 DEFA9P-201ENST00000433042 285 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AP000949.1-201ENST00000438328 629 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC023271.1-201ENST00000445936 1090 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC022336.1-201ENST00000475510 337 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 RPL32P33-201ENST00000487023 394 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC008443.2-201ENST00000499096 566 ntTSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 OR10J4-201ENST00000504970 935 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 MOCS2-206ENST00000510818 1251 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC027343.2-201ENST00000513219 343 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 HAND2-AS1-235ENST00000515376 951 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 RNU6-467P-201ENST00000517027 110 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 OR7E10P-201ENST00000526420 991 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC006530.1-201ENST00000555980 571 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 LINC02193-202ENST00000566864 719 ntTSL 3 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 MOCS2-210ENST00000584946 736 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC145423.1-201ENST00000605712 336 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL109954.2-201ENST00000611020 530 ntTSL 4 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL133445.2-201ENST00000611191 527 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL139099.4-201ENST00000614802 114 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC245014.3-201ENST00000618589 347 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC074276.2-201ENST00000619891 348 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL137789.1-204ENST00000623503 666 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC129778.1-202ENST00000623812 261 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL355480.1-201ENST00000629041 99 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL591379.1-207ENST00000635982 261 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 AMYH02020865.1-205ENST00000636189 261 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC4.91□□□□□ -1.62
NKX3-1Q99801 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AL034546.1-201ENST00000623740 3693 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 POLE2-206ENST00000554396 1581 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AF287957.1-201ENST00000607368 1595 ntBASIC4.91□□□□□ -1.62
NKX3-1Q99801 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
NKX3-1Q99801 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.9□□□□□ -1.62
NKX3-1Q99801 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
NKX3-1Q99801 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
NKX3-1Q99801 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC4.9□□□□□ -1.62
NKX3-1Q99801 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
NKX3-1Q99801 ELMO1-203ENST00000396045 2524 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
NKX3-1Q99801 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
NKX3-1Q99801 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
NKX3-1Q99801 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.62
NKX3-1Q99801 Y_RNA.110-201ENST00000363220 99 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 RN7SKP275-201ENST00000364626 301 ntBASIC4.9□□□□□ -1.63
NKX3-1Q99801 FIG4-202ENST00000368941 791 ntTSL 3 BASIC4.9□□□□□ -1.63
NKX3-1Q99801 U3.28-201ENST00000391249 210 ntBASIC4.9□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 105.4 ms