Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 TMSB4XP2-201ENST00000335179 210 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 RNFT1P3-201ENST00000340898 1052 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 OR52B6-201ENST00000345043 1008 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 RNA5SP122-201ENST00000384457 108 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 CAPSL-201ENST00000397366 969 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 HIST1H3PS1-201ENST00000404612 417 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 RNU2-72P-201ENST00000411175 163 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 RN7SKP279-201ENST00000411383 298 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AL512353.1-202ENST00000416809 627 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC079807.1-201ENST00000429993 481 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 MTUS2-AS2-202ENST00000434779 720 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC022387.1-201ENST00000444770 794 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 OR7E116P-201ENST00000448529 957 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC026347.1-201ENST00000463255 474 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 NADK2-AS1-201ENST00000501794 720 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 SCGB3A2-202ENST00000504320 440 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC116634.1-201ENST00000506926 447 ntTSL 5 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 LINC02432-203ENST00000511213 719 ntTSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 PRMT5P1-201ENST00000514351 598 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC096577.1-202ENST00000515649 448 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 IGKV3D-25-201ENST00000519599 235 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC079296.1-202ENST00000521394 960 ntTSL 4 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 CETN3-206ENST00000522864 738 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC024341.1-201ENST00000526444 1552 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AP001001.1-202ENST00000527594 692 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC084824.2-201ENST00000548906 345 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 DHFRP1-201ENST00000579682 559 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC007938.2-201ENST00000604666 2634 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC005014.3-201ENST00000605985 190 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 RNU6-84P-201ENST00000607737 102 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 MIR6809-201ENST00000612189 116 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 MIR6133-201ENST00000617057 108 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AL034549.2-201ENST00000618285 3373 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC020978.9-201ENST00000624380 1141 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 AC006453.5-201ENST00000636451 619 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 OR8J3-204ENST00000642058 3806 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 AP001029.2-203ENST00000589795 4910 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 MAPK10-328ENST00000641553 4009 ntBASIC4.93□□□□□ -1.62
NKX3-1Q99801 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
NKX3-1Q99801 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 LIX1-AS1-201ENST00000504578 1793 ntTSL 5 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.93□□□□□ -1.62
NKX3-1Q99801 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 DIAPH3-208ENST00000498416 2249 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 MIR421-201ENST00000365696 85 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 RNU1-136P-201ENST00000384181 164 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC005042.1-201ENST00000393397 800 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 MRPL53P1-201ENST00000414323 319 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 TRIM60P17-201ENST00000415181 719 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 AL133482.1-201ENST00000415988 498 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC073283.2-202ENST00000426892 591 ntTSL 4 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 VTI1BP4-201ENST00000427516 527 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 AL583785.1-201ENST00000428006 512 ntTSL 2 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 CYCSP51-201ENST00000443545 318 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 TRIM60P16-201ENST00000444048 694 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC097463.1-201ENST00000447288 481 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 PPIAP27-201ENST00000453800 265 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC090568.1-201ENST00000509499 856 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 UGT2A3P7-201ENST00000510485 734 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC006499.4-201ENST00000510947 694 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 RNA5SP340-201ENST00000517132 107 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 NSMCE2-202ENST00000517315 996 ntTSL 3 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 NRG1-IT1-201ENST00000520444 758 ntTSL 3 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 LINC02411-203ENST00000546180 959 ntTSL 4 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC139697.1-201ENST00000548429 745 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC091078.2-201ENST00000557145 559 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 LINC02345-203ENST00000558897 405 ntTSL 3 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 POU1F1-203ENST00000560656 647 ntTSL 5 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC066613.1-202ENST00000560727 630 ntTSL 5 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 MIR4310-201ENST00000582950 57 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 AL136084.2-212ENST00000589976 654 ntTSL 5 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AC040174.2-201ENST00000602701 465 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 AL096712.1-201ENST00000614561 159 ntBASIC4.92□□□□□ -1.62
NKX3-1Q99801 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC4.92□□□□□ -1.62
NKX3-1Q99801 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
NKX3-1Q99801 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.92□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms