Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 AC063977.5-201ENST00000601044 974 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AL135786.2-201ENST00000608422 615 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC024884.1-201ENST00000620583 399 ntBASIC5.59□□□□□ -1.51
VPS39Q96JC1 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.59□□□□□ -1.51
VPS39Q96JC1 RRM1-201ENST00000300738 3076 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 DUSP19-202ENST00000354221 5176 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
VPS39Q96JC1 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
VPS39Q96JC1 SLC12A1-205ENST00000558405 3426 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 MTCO1P22-201ENST00000604619 1360 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 PCDH15-201ENST00000320301 6845 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 OR56A4-204ENST00000641835 3613 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC144833.1-201ENST00000567953 4089 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC107977.1-201ENST00000355745 939 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 SNORA64.1-201ENST00000362600 132 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 SUGT1P2-201ENST00000379452 992 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC004386.1-201ENST00000393214 761 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 EI24P3-201ENST00000399046 1062 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 MIR1203-201ENST00000408812 85 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 LINC01614-201ENST00000415479 648 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 GNG5P5-201ENST00000420444 220 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 ODF2-AS1-201ENST00000420801 407 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 SDCBP-203ENST00000424270 1277 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 NDUFB4P8-201ENST00000435351 367 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC073465.2-201ENST00000440938 498 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 MTCYBP14-201ENST00000457471 715 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 RPS3AP15-201ENST00000483874 781 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 NENFP3-201ENST00000503735 313 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 TOMM20P1-201ENST00000534518 427 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC009019.1-203ENST00000568603 515 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC010632.3-201ENST00000611377 369 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 AL162574.1-201ENST00000615702 950 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 RBMS3-AS2-206ENST00000629296 438 ntTSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 OR8G3P-202ENST00000641572 1255 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
VPS39Q96JC1 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
VPS39Q96JC1 AC008079.2-201ENST00000623543 20396 ntBASIC5.58□□□□□ -1.52
VPS39Q96JC1 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 GUCY1A3-201ENST00000296518 4400 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 GPATCH11-201ENST00000281932 3570 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 AL355306.2-206ENST00000635233 1903 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 RNU6-697P-201ENST00000363348 107 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 AL356476.1-201ENST00000421481 480 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 RPL7P56-201ENST00000429441 717 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 AC110602.1-201ENST00000437414 318 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 MTCO3P17-201ENST00000443775 513 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 AZGP1P2-201ENST00000454506 345 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 LINC01487-201ENST00000462531 905 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 USP9YP2-201ENST00000504503 1000 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 AC114781.3-201ENST00000512083 142 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 USP9YP1-201ENST00000513521 1002 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 AC068305.2-201ENST00000550567 1205 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 AC100863.1-201ENST00000584843 560 ntTSL 4 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 AL022394.1-201ENST00000606979 292 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 Six3os1_2.1-201ENST00000616963 217 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 AC092683.1-207ENST00000620051 837 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 CCL4L2-217ENST00000620250 667 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
VPS39Q96JC1 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 MT-RNR2-201ENST00000387347 1559 ntBASIC5.57□□□□□ -1.52
VPS39Q96JC1 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
VPS39Q96JC1 AL359715.3-201ENST00000569267 2123 ntBASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 119.9 ms