Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 OR51I2-202ENST00000641930 3302 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
USP39Q53GS9 OR51Q1-201ENST00000300778 1096 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
USP39Q53GS9 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 AL050335.1-201ENST00000396909 869 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 CEACAM7-202ENST00000401731 1236 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 RN7SKP121-201ENST00000410842 305 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 GSTM2-205ENST00000414179 982 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 TEX50-201ENST00000417563 821 ntAPPRIS P1 TSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 SLC16A12-AS1-201ENST00000423474 405 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 SEPT7-AS1-203ENST00000437235 3810 ntTSL 5 BASIC6.3□□□□□ -1.4
USP39Q53GS9 LINC01891-201ENST00000439798 538 ntTSL 4 BASIC6.3□□□□□ -1.4
USP39Q53GS9 KRTAP2-5P-201ENST00000446109 396 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 TMEM247-203ENST00000449601 741 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 MIR205HG-209ENST00000458250 406 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 RN7SL177P-201ENST00000476596 299 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 RPS4XP14-201ENST00000493072 781 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 SSR3-208ENST00000496050 579 ntTSL 4 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC107401.1-201ENST00000503426 685 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 SUMO2P5-201ENST00000506790 245 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 C5orf64-204ENST00000507461 535 ntTSL 4 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 LINC02466-202ENST00000509105 653 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC090150.1-201ENST00000521408 585 ntTSL 4 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC087373.1-201ENST00000524920 491 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
USP39Q53GS9 UBTFL9-201ENST00000534504 1148 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC6.3□□□□□ -1.4
USP39Q53GS9 NDUFAF4P1-201ENST00000559425 519 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 CAPN3-210ENST00000561817 915 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 LINC00921-201ENST00000572123 243 ntTSL 5 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC005703.3-201ENST00000579159 373 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 MIR4433B-201ENST00000581329 102 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC127024.4-201ENST00000585212 308 ntTSL 5 BASIC6.3□□□□□ -1.4
USP39Q53GS9 NPIPB1P-202ENST00000588786 828 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 AC068768.2-201ENST00000602352 343 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 AC004241.3-201ENST00000611728 517 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC6.3□□□□□ -1.4
USP39Q53GS9 AC083865.1-201ENST00000636634 831 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 OR51Q1-202ENST00000641085 1096 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
USP39Q53GS9 BX649567.1-201ENST00000642071 1134 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.3□□□□□ -1.4
USP39Q53GS9 DDX6P1-205ENST00000441966 1436 ntBASIC6.3□□□□□ -1.4
USP39Q53GS9 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 ERI2-206ENST00000563117 2903 ntTSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 LGALS17A-201ENST00000412609 2562 ntTSL 2 BASIC6.3□□□□□ -1.4
USP39Q53GS9 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
USP39Q53GS9 MAGEB16-203ENST00000399988 1682 ntAPPRIS P2 TSL 5 BASIC6.3□□□□□ -1.4
USP39Q53GS9 TOR1AIP2-206ENST00000609928 4364 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC01751-201ENST00000569178 1770 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 STXBP4-203ENST00000405898 2229 ntTSL 5 BASIC6.29□□□□□ -1.4
USP39Q53GS9 RASGEF1B-214ENST00000638048 2386 ntTSL 5 BASIC6.29□□□□□ -1.4
USP39Q53GS9 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC6.29□□□□□ -1.4
USP39Q53GS9 RNU6-386P-201ENST00000362650 107 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 TRIM60P17-201ENST00000415181 719 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 LIPT1P1-201ENST00000415870 1186 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AC104777.3-201ENST00000416350 545 ntTSL 3 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC6.29□□□□□ -1.4
USP39Q53GS9 RPS3AP44-201ENST00000425466 790 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AL669841.1-201ENST00000425723 558 ntTSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC006994.1-201ENST00000438212 839 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC01449-201ENST00000440213 1220 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 AL359265.1-201ENST00000440296 795 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AL096829.2-201ENST00000446582 742 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC01684-203ENST00000453784 2908 ntTSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AL021940.1-201ENST00000454271 677 ntTSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC011476.1-201ENST00000466725 307 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 RN7SL273P-201ENST00000481561 299 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 LINC00613-201ENST00000504365 467 ntTSL 3 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC6.29□□□□□ -1.4
USP39Q53GS9 RPL7L1P4-201ENST00000513004 707 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 Y_RNA.667-201ENST00000516212 107 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AC016405.1-202ENST00000524348 758 ntTSL 3 BASIC6.29□□□□□ -1.4
USP39Q53GS9 MSANTD2-204ENST00000526629 3086 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
USP39Q53GS9 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 BBOX1-205ENST00000529202 1725 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC063947.1-201ENST00000549036 557 ntTSL 4 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC079600.1-201ENST00000550326 297 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AC068305.2-201ENST00000550567 1205 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 ZNF321P-202ENST00000550843 495 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC092121.1-201ENST00000569452 202 ntBASIC6.29□□□□□ -1.4
USP39Q53GS9 AC010401.2-202ENST00000570663 396 ntTSL 2 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC6.29□□□□□ -1.4
USP39Q53GS9 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 79.9 ms