Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 HSPA8P15-201ENST00000401676 786 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.43□□□□□ -1.54
CXCL12P48061 RNGTTP1-201ENST00000420965 728 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 AL354824.1-201ENST00000424931 349 ntTSL 3 BASIC5.43□□□□□ -1.54
CXCL12P48061 AL031767.1-201ENST00000426374 386 ntTSL 5 BASIC5.43□□□□□ -1.54
CXCL12P48061 MRPS21P3-201ENST00000436696 262 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 CT45A11P-201ENST00000448043 1134 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC5.43□□□□□ -1.54
CXCL12P48061 AF015262.1-201ENST00000455028 698 ntTSL 3 BASIC5.43□□□□□ -1.54
CXCL12P48061 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
CXCL12P48061 ARHGEF3-AS1-201ENST00000477246 489 ntTSL 2 BASIC5.43□□□□□ -1.54
CXCL12P48061 ATP5LP5-201ENST00000483050 299 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.43□□□□□ -1.54
CXCL12P48061 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 BNIP3P1-201ENST00000547295 580 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 LINC02412-201ENST00000552584 1269 ntTSL 5 BASIC5.43□□□□□ -1.54
CXCL12P48061 AC063949.1-201ENST00000552900 865 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 AC022469.1-201ENST00000555291 656 ntTSL 3 BASIC5.43□□□□□ -1.54
CXCL12P48061 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.43□□□□□ -1.54
CXCL12P48061 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC5.43□□□□□ -1.54
CXCL12P48061 HIRAP1-201ENST00000605318 787 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 AC093799.2-201ENST00000610062 578 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 MIR378J-201ENST00000611988 109 ntBASIC5.43□□□□□ -1.54
CXCL12P48061 TEX41-254ENST00000626394 423 ntTSL 5 BASIC5.43□□□□□ -1.54
CXCL12P48061 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 PCGF5-205ENST00000614189 7037 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.43□□□□□ -1.54
CXCL12P48061 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.43□□□□□ -1.54
CXCL12P48061 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
CXCL12P48061 PARP8-212ENST00000505697 2747 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CXCL12P48061 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.42□□□□□ -1.54
CXCL12P48061 BDNF-210ENST00000438929 4059 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CXCL12P48061 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CXCL12P48061 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC5.42□□□□□ -1.54
CXCL12P48061 OR5AS1-202ENST00000641320 7860 ntAPPRIS P1 BASIC5.42□□□□□ -1.54
CXCL12P48061 ADIG-201ENST00000373348 430 ntTSL 2 BASIC5.42□□□□□ -1.54
CXCL12P48061 MIR192-201ENST00000384915 110 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 MIR600-201ENST00000385007 98 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 RPL11P3-201ENST00000395256 523 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 RPS4XP9-201ENST00000405151 780 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 AL139231.1-201ENST00000431001 312 ntTSL 3 BASIC5.42□□□□□ -1.54
CXCL12P48061 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.42□□□□□ -1.54
CXCL12P48061 GSTA7P-201ENST00000438425 448 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.42□□□□□ -1.54
CXCL12P48061 RN7SL481P-201ENST00000477764 299 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 RN7SL346P-201ENST00000491561 294 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC5.42□□□□□ -1.54
CXCL12P48061 GTF2F2P1-201ENST00000511083 675 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC5.42□□□□□ -1.54
CXCL12P48061 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.42□□□□□ -1.54
CXCL12P48061 AC018558.5-201ENST00000565840 952 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 MIR4301-201ENST00000577203 66 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 AL683813.2-201ENST00000605245 502 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 AP003789.1-201ENST00000617737 605 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC5.42□□□□□ -1.54
CXCL12P48061 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CXCL12P48061 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CXCL12P48061 AMD1-203ENST00000368882 3059 ntTSL 2 BASIC5.42□□□□□ -1.54
CXCL12P48061 EXOC1-201ENST00000346134 3357 ntAPPRIS P4 TSL 2 BASIC5.42□□□□□ -1.54
CXCL12P48061 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.42□□□□□ -1.54
CXCL12P48061 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC5.42□□□□□ -1.54
CXCL12P48061 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CXCL12P48061 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.42□□□□□ -1.54
CXCL12P48061 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 SDAD1-203ENST00000395711 2513 ntTSL 2 BASIC5.41□□□□□ -1.54
CXCL12P48061 GPR65-201ENST00000267549 4522 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC5.41□□□□□ -1.54
CXCL12P48061 RALYL-206ENST00000521376 1457 ntTSL 5 BASIC5.41□□□□□ -1.54
CXCL12P48061 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 ZNF540-201ENST00000316433 3099 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 RNMT-202ENST00000383314 6250 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 OR10AG1-201ENST00000312345 1016 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CXCL12P48061 C1orf162-201ENST00000343534 1107 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 MIR105-1-201ENST00000385222 81 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CXCL12P48061 AC096921.1-201ENST00000411661 375 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC5.41□□□□□ -1.54
CXCL12P48061 AC084149.2-201ENST00000438443 797 ntTSL 5 BASIC5.41□□□□□ -1.54
CXCL12P48061 TRY2P-201ENST00000448860 689 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 AC092647.2-201ENST00000452998 253 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 RPL7P16-201ENST00000479738 738 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.41□□□□□ -1.54
CXCL12P48061 AC083795.2-201ENST00000510034 610 ntTSL 3 BASIC5.41□□□□□ -1.54
CXCL12P48061 AL671862.1-201ENST00000515851 349 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 RN7SKP253-201ENST00000516424 309 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 AC092112.1-201ENST00000538329 640 ntTSL 3 BASIC5.41□□□□□ -1.54
CXCL12P48061 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.41□□□□□ -1.54
CXCL12P48061 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC5.41□□□□□ -1.54
CXCL12P48061 AC005899.7-201ENST00000618199 588 ntBASIC5.41□□□□□ -1.54
CXCL12P48061 OSER1-AS1-205ENST00000623343 827 ntTSL 5 BASIC5.41□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms