Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC008149.1-201ENST00000551844 525 ntTSL 4 BASIC6.42□□□□□ -1.38
BRCA1P38398 AC018558.5-201ENST00000565840 952 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.42□□□□□ -1.38
BRCA1P38398 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC6.42□□□□□ -1.38
BRCA1P38398 ERVK-28-203ENST00000600419 457 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 AL109618.2-201ENST00000605527 211 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 AC006338.2-201ENST00000616864 791 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 Metazoa_SRP.172-201ENST00000621807 265 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 AC004836.1-201ENST00000623032 634 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 TMPRSS15-201ENST00000284885 3947 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 AC100871.1-201ENST00000507871 1456 ntBASIC6.42□□□□□ -1.38
BRCA1P38398 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC6.42□□□□□ -1.38
BRCA1P38398 MLLT10-202ENST00000377059 4850 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC6.42□□□□□ -1.38
BRCA1P38398 ZNF286A-202ENST00000395894 5443 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 PSG5-210ENST00000599812 1884 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
BRCA1P38398 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC6.42□□□□□ -1.38
BRCA1P38398 MKL2-202ENST00000571589 8799 ntAPPRIS ALT2 TSL 2 BASIC6.42□□□□□ -1.38
BRCA1P38398 KALRN-204ENST00000360013 10806 ntAPPRIS P5 TSL 5 BASIC6.42□□□□□ -1.38
BRCA1P38398 PSD3-204ENST00000440756 11690 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
BRCA1P38398 SH3D19-201ENST00000304527 5273 ntAPPRIS P3 TSL 2 BASIC6.41□□□□□ -1.38
BRCA1P38398 ADA2-206ENST00000449907 4278 ntAPPRIS ALT2 TSL 2 BASIC6.41□□□□□ -1.38
BRCA1P38398 OR7C1-205ENST00000642030 11778 ntAPPRIS P1 BASIC6.41□□□□□ -1.38
BRCA1P38398 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 DLG2-201ENST00000280241 7730 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
BRCA1P38398 ANXA1-201ENST00000257497 1509 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC6.41□□□□□ -1.38
BRCA1P38398 EEF1A1P33-201ENST00000554413 1362 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 SNORD1C-201ENST00000363315 78 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 RNA5SP90-201ENST00000364801 99 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 RNU1-136P-201ENST00000384181 164 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 RNA5SP251-201ENST00000410614 137 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 AC096921.1-201ENST00000411661 375 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 MOBP-203ENST00000415443 577 ntAPPRIS ALT2 TSL 4 BASIC6.41□□□□□ -1.38
BRCA1P38398 AC234779.1-201ENST00000425910 285 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 REG1CP-206ENST00000447469 496 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC6.41□□□□□ -1.38
BRCA1P38398 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC6.41□□□□□ -1.38
BRCA1P38398 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC6.41□□□□□ -1.38
BRCA1P38398 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.41□□□□□ -1.38
BRCA1P38398 TACC1-210ENST00000520615 5509 ntTSL 2 BASIC6.41□□□□□ -1.38
BRCA1P38398 IL1RAP-202ENST00000317757 5413 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 FAM197Y2-202ENST00000448006 2338 ntTSL 2 BASIC6.41□□□□□ -1.38
BRCA1P38398 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.41□□□□□ -1.38
BRCA1P38398 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.41□□□□□ -1.38
BRCA1P38398 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC6.41□□□□□ -1.38
BRCA1P38398 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
BRCA1P38398 AC116036.1-201ENST00000412199 367 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 AC004074.1-201ENST00000421810 1063 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 OR10T1P-201ENST00000424327 947 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.41□□□□□ -1.38
BRCA1P38398 RN7SL41P-201ENST00000476144 297 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.41□□□□□ -1.38
BRCA1P38398 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.41□□□□□ -1.38
BRCA1P38398 PARP1P2-201ENST00000556806 195 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC6.41□□□□□ -1.38
BRCA1P38398 AC233699.1-201ENST00000569955 1168 ntBASIC6.41□□□□□ -1.38
BRCA1P38398 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
BRCA1P38398 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC6.4□□□□□ -1.38
BRCA1P38398 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC6.4□□□□□ -1.38
BRCA1P38398 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
BRCA1P38398 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
BRCA1P38398 AC104581.5-201ENST00000624171 7141 ntBASIC6.4□□□□□ -1.38
BRCA1P38398 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
BRCA1P38398 PPFIA2-219ENST00000550359 3808 ntTSL 2 BASIC6.4□□□□□ -1.38
BRCA1P38398 PTER-202ENST00000378000 3777 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.38
BRCA1P38398 ELOVL7-203ENST00000505959 4165 ntTSL 1 (best) BASIC6.4□□□□□ -1.38
BRCA1P38398 ALG13-203ENST00000394780 4133 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.38
BRCA1P38398 MECOM-209ENST00000472280 3593 ntTSL 5 BASIC6.4□□□□□ -1.38
BRCA1P38398 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 RNA5SP515-201ENST00000364570 118 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 RNGTTP1-201ENST00000420965 728 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC6.4□□□□□ -1.39
BRCA1P38398 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 HMGN2P25-201ENST00000486956 268 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 AC100784.1-201ENST00000522790 310 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 AC138701.1-201ENST00000524329 714 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 SS18L2P2-201ENST00000583960 235 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC6.4□□□□□ -1.39
BRCA1P38398 AP005131.7-201ENST00000610087 611 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 AP001885.1-201ENST00000621658 558 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.4□□□□□ -1.39
BRCA1P38398 VNN3-207ENST00000425515 1761 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC6.4□□□□□ -1.39
BRCA1P38398 CASC19-260ENST00000641828 2001 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 KARSP3-201ENST00000571212 1504 ntBASIC6.4□□□□□ -1.39
BRCA1P38398 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC6.4□□□□□ -1.39
BRCA1P38398 LRRC7-203ENST00000370958 2375 ntTSL 1 (best) BASIC6.4□□□□□ -1.39
BRCA1P38398 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC6.4□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 166.8 ms