Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC6.39□□□□□ -1.39
SCN4AP35499 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 CLEC12A-202ENST00000350667 699 ntAPPRIS ALT2 TSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 AP002530.1-201ENST00000405705 684 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 RN7SKP27-201ENST00000410684 333 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 OR2AM1P-201ENST00000422137 422 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 RSL24D1P6-201ENST00000426934 401 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AL109807.1-201ENST00000438222 569 ntTSL 3 BASIC6.39□□□□□ -1.39
SCN4AP35499 H3F3BP1-201ENST00000440551 403 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC6.39□□□□□ -1.39
SCN4AP35499 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC6.39□□□□□ -1.39
SCN4AP35499 AC006600.2-201ENST00000624834 2506 ntBASIC6.39□□□□□ -1.39
SCN4AP35499 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC6.39□□□□□ -1.39
SCN4AP35499 MIR4435-2HG-207ENST00000439362 1522 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.38□□□□□ -1.39
SCN4AP35499 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 BPIFC-201ENST00000300399 1980 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 FSTL5-202ENST00000379164 4757 ntAPPRIS ALT1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 KLHL41-201ENST00000284669 2464 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 ZNF407-203ENST00000577538 5794 ntAPPRIS ALT2 TSL 2 BASIC6.38□□□□□ -1.39
SCN4AP35499 FOXJ3-209ENST00000545068 5165 ntAPPRIS P3 TSL 5 BASIC6.38□□□□□ -1.39
SCN4AP35499 RAB14-201ENST00000373840 4145 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 CPNE3-203ENST00000517490 4865 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC6.38□□□□□ -1.39
SCN4AP35499 LINC01291-202ENST00000418204 441 ntTSL 5 BASIC6.38□□□□□ -1.39
SCN4AP35499 AC009480.2-201ENST00000422916 432 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC6.38□□□□□ -1.39
SCN4AP35499 RPL18P10-201ENST00000425606 538 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC6.38□□□□□ -1.39
SCN4AP35499 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.38□□□□□ -1.39
SCN4AP35499 HCG14-201ENST00000444986 413 ntTSL 2 BASIC6.38□□□□□ -1.39
SCN4AP35499 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC6.38□□□□□ -1.39
SCN4AP35499 OSTCP1-201ENST00000455507 450 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 RPL7AP28-201ENST00000464513 571 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC6.38□□□□□ -1.39
SCN4AP35499 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC6.38□□□□□ -1.39
SCN4AP35499 SCARNA9-201ENST00000530422 353 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 OR5AM1P-201ENST00000532136 1032 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 YWHABP2-201ENST00000540201 713 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 AC008033.2-201ENST00000542626 177 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC6.38□□□□□ -1.39
SCN4AP35499 MIR4284-201ENST00000578924 81 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 AL513327.3-201ENST00000602618 469 ntBASIC6.38□□□□□ -1.39
SCN4AP35499 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.38□□□□□ -1.39
SCN4AP35499 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.38□□□□□ -1.39
SCN4AP35499 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.38□□□□□ -1.39
SCN4AP35499 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 TNKS-206ENST00000518281 3897 ntTSL 2 BASIC6.38□□□□□ -1.39
SCN4AP35499 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC6.38□□□□□ -1.39
SCN4AP35499 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC6.38□□□□□ -1.39
SCN4AP35499 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC6.38□□□□□ -1.39
SCN4AP35499 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 SGCD-202ENST00000435422 9755 ntAPPRIS ALT1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 NOVA1-206ENST00000539517 3912 ntAPPRIS P4 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 DCP2-201ENST00000389063 8947 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 AL009179.1-201ENST00000406085 265 ntBASIC6.37□□□□□ -1.39
SCN4AP35499 AC012519.1-201ENST00000424588 610 ntBASIC6.37□□□□□ -1.39
SCN4AP35499 HSPD1P12-201ENST00000429127 1069 ntBASIC6.37□□□□□ -1.39
SCN4AP35499 AL021408.1-201ENST00000430428 552 ntTSL 4 BASIC6.37□□□□□ -1.39
SCN4AP35499 RPL5P25-201ENST00000441148 775 ntBASIC6.37□□□□□ -1.39
SCN4AP35499 AC103987.1-201ENST00000473394 348 ntBASIC6.37□□□□□ -1.39
SCN4AP35499 AP006289.1-201ENST00000538089 277 ntBASIC6.37□□□□□ -1.39
SCN4AP35499 AC006115.2-201ENST00000596823 202 ntBASIC6.37□□□□□ -1.39
SCN4AP35499 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 GOLGA6L22-204ENST00000622895 4178 ntAPPRIS P5 TSL 5 BASIC6.37□□□□□ -1.39
SCN4AP35499 LINC00700-201ENST00000413603 2097 ntTSL 2 BASIC6.37□□□□□ -1.39
SCN4AP35499 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.37□□□□□ -1.39
SCN4AP35499 KIAA0232-202ENST00000425103 7771 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 C16orf62-204ENST00000448695 3353 ntTSL 5 BASIC6.37□□□□□ -1.39
SCN4AP35499 C16orf62-216ENST00000543152 3352 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.39
SCN4AP35499 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC6.37□□□□□ -1.39
SCN4AP35499 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
SCN4AP35499 RNA5SP428-201ENST00000365129 132 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC6.36□□□□□ -1.39
SCN4AP35499 AC069213.2-201ENST00000420238 366 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC6.36□□□□□ -1.39
SCN4AP35499 AC017002.1-201ENST00000432268 881 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 AL445687.2-201ENST00000458156 728 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC6.36□□□□□ -1.39
SCN4AP35499 RN7SL423P-201ENST00000486202 304 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 GAPDHP56-201ENST00000506031 988 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 RN7SKP21-201ENST00000516503 220 ntBASIC6.36□□□□□ -1.39
SCN4AP35499 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC6.36□□□□□ -1.39
SCN4AP35499 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC6.36□□□□□ -1.39
SCN4AP35499 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC6.36□□□□□ -1.39
SCN4AP35499 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC6.36□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms