Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.61
SKA3Q8IX90 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC116158.1-201ENST00000560231 2129 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 ORC4-215ENST00000536575 6328 ntTSL 2 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC022826.2-201ENST00000358757 776 ntAPPRIS P1 TSL 4 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 RNA5SP30-201ENST00000365552 115 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC087752.1-201ENST00000391360 558 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AL050305.1-201ENST00000399993 1230 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 GPC5-AS2-201ENST00000417589 401 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AL662874.1-201ENST00000426065 230 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 LRRC37A14P-201ENST00000452297 462 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC007998.1-201ENST00000474156 672 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC135999.1-201ENST00000478962 479 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC087672.1-201ENST00000479876 766 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 RPS3AP15-201ENST00000483874 781 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 DUTP7-201ENST00000507982 486 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 SNORA43.3-201ENST00000517240 103 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 IGLV3-24-201ENST00000517477 197 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 CYCSP22-201ENST00000517555 339 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC025524.2-206ENST00000517953 439 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 TRIM51DP-201ENST00000529746 596 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 FLVCR2-207ENST00000555027 938 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 SETP1-201ENST00000556014 845 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AP005901.4-201ENST00000577336 569 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 GTSCR1-201ENST00000582578 470 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AL513314.2-202ENST00000617077 536 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AL391425.1-202ENST00000617518 774 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AL513314.2-201ENST00000621440 545 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 DLG1-213ENST00000443183 2516 ntTSL 2 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 MTHFD2L-201ENST00000325278 2300 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 SRRM1P3-201ENST00000426911 2678 ntBASIC4.96□□□□□ -1.62
SKA3Q8IX90 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
SKA3Q8IX90 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.96□□□□□ -1.62
SKA3Q8IX90 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 OR13C1P-202ENST00000641378 2919 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 EEF1A1P33-201ENST00000554413 1362 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 CLPS-201ENST00000259938 526 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 RNA5SP326-201ENST00000363209 110 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 RN7SKP145-201ENST00000363291 303 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 RN7SKP292-201ENST00000365522 317 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 RNA5SP284-201ENST00000384547 118 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AC005042.1-201ENST00000393397 800 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL355300.1-201ENST00000412439 187 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 EEF1A1P29-201ENST00000416082 1096 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 OR6C64P-201ENST00000419708 825 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AC093155.2-201ENST00000420734 937 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL513188.1-201ENST00000421167 614 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 FTLP19-201ENST00000433300 394 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 TH2LCRR-202ENST00000435042 472 ntTSL 5 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 RPL23AP19-201ENST00000436229 369 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL139280.1-201ENST00000436340 463 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 SUMO2P3-201ENST00000438311 288 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL606534.1-201ENST00000439562 694 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AC005297.1-201ENST00000444765 862 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AC087501.1-201ENST00000445617 715 ntTSL 5 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 SEPT14P1-201ENST00000458703 648 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 GAPDHP62-201ENST00000515313 990 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 DCN-210ENST00000547568 823 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL161752.1-201ENST00000557721 263 ntTSL 2 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 MIR4472-2-201ENST00000582069 67 ntBASIC4.95□□□□□ -1.62
SKA3Q8IX90 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC4.95□□□□□ -1.62
SKA3Q8IX90 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
SKA3Q8IX90 MIR325HG-202ENST00000626832 598 ntTSL 4 BASIC4.95□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms