Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AL138828.1-204ENST00000413745 898 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 AL035422.1-201ENST00000414193 397 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 AC099782.1-201ENST00000425889 474 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 PCBP1-AS1-232ENST00000442040 1111 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 WDR82P2-201ENST00000444540 928 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AL392089.1-202ENST00000444793 449 ntTSL 2 BASIC4.03□□□□□ -1.76
FOXA3P55318 CRYZL1-217ENST00000445393 824 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 BTF3P6-201ENST00000448054 499 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC4.03□□□□□ -1.76
FOXA3P55318 CBX1P5-201ENST00000475330 559 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 ZSWIM7-209ENST00000486655 726 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 AC009120.1-201ENST00000493458 473 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC090638.1-201ENST00000498296 909 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AL158068.1-201ENST00000506116 616 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC138938.1-201ENST00000515431 782 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 OR8G3P-201ENST00000533406 921 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 BNIP3P1-201ENST00000547295 580 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC009387.1-201ENST00000549163 441 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 LINC02307-201ENST00000553827 257 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 AC006530.1-201ENST00000555980 571 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC4.03□□□□□ -1.76
FOXA3P55318 AC092332.1-201ENST00000563684 829 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 TRIM37-212ENST00000584889 353 ntTSL 2 BASIC4.03□□□□□ -1.76
FOXA3P55318 AL078624.2-201ENST00000605063 554 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC012511.1-201ENST00000608140 449 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 MIR6885-201ENST00000612241 66 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC037198.3-201ENST00000616754 526 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC015660.5-201ENST00000623238 564 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AP003400.3-201ENST00000624904 346 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 AC022919.1-201ENST00000624979 626 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 LINC01435-220ENST00000630847 714 ntTSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 OPRM1-215ENST00000520708 1519 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA3P55318 AC021242.1-201ENST00000507315 2035 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 PRG4-203ENST00000367485 4765 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC4.03□□□□□ -1.76
FOXA3P55318 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.03□□□□□ -1.76
FOXA3P55318 AP000542.2-201ENST00000623199 6179 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
FOXA3P55318 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA3P55318 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA3P55318 RALYL-211ENST00000523850 1684 ntTSL 2 BASIC4.03□□□□□ -1.76
FOXA3P55318 OR55B1P-203ENST00000641518 2602 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 PDCD1LG2-201ENST00000397747 2365 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
FOXA3P55318 IFIT1P1-201ENST00000400497 1449 ntBASIC4.03□□□□□ -1.76
FOXA3P55318 SAMSN1-203ENST00000400566 1888 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.77
FOXA3P55318 TET1P1-201ENST00000426627 2301 ntBASIC4.03□□□□□ -1.77
FOXA3P55318 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 C9orf135-AS1-201ENST00000439418 1375 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 LINC01963-201ENST00000562038 3148 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 ZNF782-208ENST00000535338 3296 ntAPPRIS P1 TSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 TSPAN8-202ENST00000393330 1516 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 RN7SKP153-201ENST00000365026 316 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 TINAG-203ENST00000370869 782 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 CEACAM1-208ENST00000403461 1263 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 MIR1271-201ENST00000408537 86 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC007966.1-201ENST00000421998 1179 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 RPL7AP51-201ENST00000422016 760 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AC092865.3-201ENST00000425390 1026 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
FOXA3P55318 AL589765.3-201ENST00000446084 462 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AC002553.2-201ENST00000453217 340 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA3P55318 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA3P55318 CPHL1P-204ENST00000482639 584 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 RN7SL57P-201ENST00000493687 290 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 PRMT5P1-201ENST00000514351 598 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 SCARNA6.1-201ENST00000516989 238 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AP000755.1-201ENST00000527100 507 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC073941.1-201ENST00000559148 539 ntTSL 4 BASIC4.02□□□□□ -1.77
FOXA3P55318 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 AL356801.1-201ENST00000559320 294 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AC068722.1-202ENST00000559600 655 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC011840.5-201ENST00000582125 771 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC4.02□□□□□ -1.77
FOXA3P55318 AC090236.2-201ENST00000587933 1101 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
FOXA3P55318 TEX41-218ENST00000596540 882 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA3P55318 AP000769.2-201ENST00000602344 396 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.02□□□□□ -1.77
FOXA3P55318 AL135999.3-201ENST00000610501 812 ntBASIC4.02□□□□□ -1.77
FOXA3P55318 OSTC-205ENST00000613215 876 ntTSL 2 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms