Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.59□□□□□ -1.51
MSH3P20585 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 AC022417.1-201ENST00000624768 1303 ntBASIC5.59□□□□□ -1.51
MSH3P20585 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
MSH3P20585 OR8H3-201ENST00000313472 939 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
MSH3P20585 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
MSH3P20585 WFDC11-202ENST00000356562 642 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 RNA5SP46-201ENST00000362370 120 ntBASIC5.59□□□□□ -1.51
MSH3P20585 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.59□□□□□ -1.51
MSH3P20585 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 AC005529.1-201ENST00000411969 289 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH3P20585 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH3P20585 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH3P20585 RNF10P1-201ENST00000418589 369 ntBASIC5.59□□□□□ -1.51
MSH3P20585 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.59□□□□□ -1.51
MSH3P20585 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH3P20585 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC138761.5-201ENST00000433967 325 ntBASIC5.59□□□□□ -1.51
MSH3P20585 RNF219-AS1-202ENST00000444769 590 ntTSL 4 BASIC5.59□□□□□ -1.51
MSH3P20585 AL161636.2-201ENST00000445179 927 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AL450996.1-201ENST00000445574 1202 ntBASIC5.59□□□□□ -1.51
MSH3P20585 EEF1B2P6-201ENST00000445713 673 ntBASIC5.59□□□□□ -1.51
MSH3P20585 RAD1P2-201ENST00000446414 663 ntBASIC5.59□□□□□ -1.51
MSH3P20585 HMGN1P36-201ENST00000446623 298 ntBASIC5.59□□□□□ -1.51
MSH3P20585 RN7SL197P-201ENST00000466981 299 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC090602.1-201ENST00000469695 252 ntBASIC5.59□□□□□ -1.51
MSH3P20585 PPIAP19-201ENST00000486414 492 ntBASIC5.59□□□□□ -1.51
MSH3P20585 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.59□□□□□ -1.51
MSH3P20585 DUTP7-201ENST00000507982 486 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC034238.3-201ENST00000512349 591 ntTSL 4 BASIC5.59□□□□□ -1.51
MSH3P20585 MTATP6P1-201ENST00000514057 681 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC062004.1-202ENST00000524014 246 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH3P20585 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH3P20585 HSPE1P2-201ENST00000554777 306 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AL049872.1-201ENST00000556323 322 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH3P20585 DHFRP1-201ENST00000579682 559 ntBASIC5.59□□□□□ -1.51
MSH3P20585 MIR4311-201ENST00000580794 100 ntBASIC5.59□□□□□ -1.51
MSH3P20585 MIR3614-201ENST00000581261 86 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC012588.1-201ENST00000583852 358 ntTSL 3 BASIC5.59□□□□□ -1.51
MSH3P20585 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH3P20585 AC087468.1-201ENST00000604365 630 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC092944.2-201ENST00000605443 889 ntBASIC5.59□□□□□ -1.51
MSH3P20585 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.59□□□□□ -1.51
MSH3P20585 AC026124.2-201ENST00000621847 656 ntBASIC5.59□□□□□ -1.51
MSH3P20585 Metazoa_SRP.130-201ENST00000622625 267 ntBASIC5.59□□□□□ -1.51
MSH3P20585 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH3P20585 AP002008.2-205ENST00000637111 1091 ntTSL 5 BASIC5.59□□□□□ -1.51
MSH3P20585 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.59□□□□□ -1.51
MSH3P20585 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.59□□□□□ -1.51
MSH3P20585 PSG9-202ENST00000270077 1705 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
MSH3P20585 GVINP1-202ENST00000531871 7271 ntBASIC5.59□□□□□ -1.52
MSH3P20585 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
MSH3P20585 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
MSH3P20585 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
MSH3P20585 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
MSH3P20585 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
MSH3P20585 URI1-201ENST00000360605 1579 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.52
MSH3P20585 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
MSH3P20585 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 AC114786.1-201ENST00000512892 1415 ntBASIC5.58□□□□□ -1.52
MSH3P20585 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 BICRAL-201ENST00000314073 6530 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.58□□□□□ -1.52
MSH3P20585 ICE2P1-201ENST00000512800 1849 ntBASIC5.58□□□□□ -1.52
MSH3P20585 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
MSH3P20585 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH3P20585 PAGE2-202ENST00000374968 551 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 G6PC2-202ENST00000375363 1214 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
MSH3P20585 IFNA8-201ENST00000380205 1039 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
MSH3P20585 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
MSH3P20585 AL136116.2-201ENST00000404020 785 ntBASIC5.58□□□□□ -1.52
MSH3P20585 DHFRP5-201ENST00000406944 564 ntBASIC5.58□□□□□ -1.52
MSH3P20585 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH3P20585 AL158817.1-201ENST00000422310 933 ntTSL 3 BASIC5.58□□□□□ -1.52
MSH3P20585 VTI1BP4-201ENST00000427516 527 ntBASIC5.58□□□□□ -1.52
MSH3P20585 AC002504.1-201ENST00000438281 691 ntBASIC5.58□□□□□ -1.52
MSH3P20585 SUMO2P3-201ENST00000438311 288 ntBASIC5.58□□□□□ -1.52
MSH3P20585 YWHAEP1-201ENST00000453697 763 ntBASIC5.58□□□□□ -1.52
MSH3P20585 NXT1P1-201ENST00000458481 316 ntBASIC5.58□□□□□ -1.52
MSH3P20585 IQCJ-SCHIP1-AS1-201ENST00000460574 508 ntTSL 3 BASIC5.58□□□□□ -1.52
MSH3P20585 AC135999.1-201ENST00000478962 479 ntBASIC5.58□□□□□ -1.52
MSH3P20585 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH3P20585 RN7SKP5-201ENST00000517045 272 ntBASIC5.58□□□□□ -1.52
MSH3P20585 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.58□□□□□ -1.52
MSH3P20585 PMS2P3-207ENST00000529061 717 ntBASIC5.58□□□□□ -1.52
MSH3P20585 AC137627.1-201ENST00000545761 289 ntBASIC5.58□□□□□ -1.52
MSH3P20585 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC5.58□□□□□ -1.52
MSH3P20585 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 90.5 ms