Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 PWAR1-201ENST00000624188 2414 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 OR55B1P-203ENST00000641518 2602 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 SLC15A2-205ENST00000489711 5673 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL162385.2-201ENST00000437864 285 ntTSL 3 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC009127.1-201ENST00000467090 155 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 RNA5SP92-201ENST00000516437 110 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL110118.1-201ENST00000553543 400 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC136944.1-201ENST00000567464 560 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC093799.2-201ENST00000610062 578 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 HOTTIP_3.1-201ENST00000619957 337 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL078621.3-201ENST00000623707 2042 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AFP-201ENST00000226359 1914 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 BMPR2-202ENST00000374580 11461 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC011525.1-201ENST00000562167 5676 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 RNA5SP335-201ENST00000363817 110 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 RPS6P23-201ENST00000413224 722 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC019185.1-201ENST00000442718 389 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AL353804.1-201ENST00000444482 451 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 RN7SL346P-201ENST00000491561 294 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 HNRNPCP1-201ENST00000556181 766 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC026992.1-201ENST00000558269 571 ntTSL 2 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 CPS1-IT1-201ENST00000628368 2306 ntBASIC1.7□□□□□ -2.14
SYNE1Q8NF91 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 RAB30-216ENST00000612684 9783 ntAPPRIS P1 TSL 3 BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC1.7□□□□□ -2.14
SYNE1Q8NF91 AP002512.4-202ENST00000641599 4530 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ADIG-201ENST00000373348 430 ntTSL 2 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 RNA5SP87-201ENST00000384155 118 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 CAV1-204ENST00000393470 598 ntTSL 4 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 NUDT19P3-201ENST00000404698 555 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 OR5D15P-201ENST00000531671 942 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 PIGN-229ENST00000638936 4233 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ATF7IP2-202ENST00000356427 3463 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 SSH1-202ENST00000326495 13040 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 RN7SKP104-201ENST00000362605 328 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 U3.36-201ENST00000408418 213 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 SLC8A1-AS1-202ENST00000417875 344 ntTSL 2 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 CLYBL-AS2-201ENST00000430125 695 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AC104984.1-201ENST00000581633 697 ntTSL 3 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 TTN-AS1-222ENST00000587576 399 ntTSL 3 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 EXPH5-203ENST00000525344 6542 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AC114876.1-201ENST00000490962 1366 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 MDM4-215ENST00000614459 9782 ntTSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AL355834.1-201ENST00000556602 3965 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 RN7SKP151-201ENST00000410230 316 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AK4P4-201ENST00000419465 646 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 RPL7P11-201ENST00000437586 658 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AP000365.1-201ENST00000438850 546 ntTSL 4 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AC006296.1-201ENST00000514401 591 ntTSL 2 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 SUMO2P19-201ENST00000518920 295 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AC134349.2-201ENST00000535136 910 ntBASIC1.69□□□□□ -2.14
SYNE1Q8NF91 AP002754.2-201ENST00000542121 462 ntTSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ANKRD20A5P-203ENST00000580200 566 ntTSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 Z98949.1-204ENST00000595102 731 ntTSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 SAMD3-204ENST00000439090 2093 ntAPPRIS P1 TSL 2 BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 GREM1-203ENST00000622074 14606 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
SYNE1Q8NF91 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms