Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AL445687.2-201ENST00000458156 728 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC100832.1-201ENST00000471945 383 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC004815.1-201ENST00000484185 331 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 RN7SL570P-201ENST00000484405 292 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AP000926.3-201ENST00000497201 299 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 NPM1P52-201ENST00000518264 846 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 CDC42P3-201ENST00000518493 633 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC090103.1-201ENST00000520386 485 ntTSL 2 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC091564.3-201ENST00000527398 429 ntTSL 3 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 HNRNPRP2-201ENST00000528421 743 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 EIF4A2P5-201ENST00000529914 499 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 DCN-210ENST00000547568 823 ntTSL 3 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AL157756.1-203ENST00000553269 600 ntTSL 3 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 MORF4L1-205ENST00000558502 855 ntTSL 3 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 RBM22P12-201ENST00000567098 1255 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC003682.1-201ENST00000599190 462 ntTSL 2 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC063977.5-201ENST00000601044 974 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AL512329.2-201ENST00000607350 548 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 MIR6748-201ENST00000610433 71 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AL121612.2-201ENST00000612261 482 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 AC005840.5-201ENST00000619166 599 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 LINC02019-201ENST00000608605 2060 ntBASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 ZNF484-201ENST00000332591 2836 ntTSL 2 BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
HDDC3Q8N4P3 INSL4-201ENST00000239316 1952 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 MAPK10-297ENST00000641287 3725 ntAPPRIS P2 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 FBXL21-201ENST00000297158 1305 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC124017.1-201ENST00000508112 1594 ntTSL 5 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 CLEC4D-201ENST00000299665 1936 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 TMPRSS11BNL-202ENST00000510782 3202 ntTSL 2 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 MGP-201ENST00000228938 694 ntTSL 3 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC136624.1-201ENST00000400791 413 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL133270.1-201ENST00000402635 279 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 Y_RNA.625-201ENST00000411256 107 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 LINC01821-201ENST00000419786 1084 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC011225.1-201ENST00000457751 369 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL355032.1-201ENST00000472981 438 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 RN7SL547P-201ENST00000490793 290 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC074255.1-201ENST00000511259 501 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL049779.3-201ENST00000557141 606 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC084757.2-201ENST00000559165 540 ntTSL 2 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC015720.2-201ENST00000567709 334 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL356608.1-201ENST00000610034 820 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL355974.3-201ENST00000617383 467 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL158062.1-201ENST00000619632 745 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 MIR8080-201ENST00000622224 89 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 CDKAL1-201ENST00000274695 3272 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 AL161756.3-201ENST00000641216 2071 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 SLC12A6-204ENST00000397707 4194 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 Z95114.1-201ENST00000624264 14574 ntBASIC5.76□□□□□ -1.49
HDDC3Q8N4P3 FOXP2-202ENST00000360232 1412 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 TTC21B-201ENST00000243344 5482 ntAPPRIS P1 TSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 ALB-209ENST00000503124 1741 ntTSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 RNA5SP319-201ENST00000362768 119 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 RNU1-59P-201ENST00000364829 162 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 HSPB11-202ENST00000371376 765 ntTSL 3 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 MIR137-201ENST00000385223 102 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AL645927.1-201ENST00000396783 406 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AC009804.1-201ENST00000400949 179 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AL121835.1-201ENST00000404250 354 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 RPL37P18-201ENST00000411602 243 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 NIFKP3-201ENST00000417799 865 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 LINC01203-201ENST00000419566 580 ntTSL 2 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 NIPA2P1-201ENST00000426223 976 ntBASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.75□□□□□ -1.49
HDDC3Q8N4P3 NPSR1-AS1-206ENST00000439852 710 ntTSL 1 (best) BASIC5.75□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms