Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 OR5B12-201ENST00000302572 1054 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 SNORA64.1-201ENST00000362600 132 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 PPCS-201ENST00000372556 984 ntTSL 2 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 RPS6P23-201ENST00000413224 722 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 RANP7-201ENST00000418085 644 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC004990.1-201ENST00000431722 564 ntTSL 4 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC242426.1-201ENST00000435270 960 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 NPM1P48-201ENST00000436002 853 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC000111.1-201ENST00000441019 221 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AL157371.1-201ENST00000451910 394 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 MRE11P1-201ENST00000464884 2127 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC090589.1-201ENST00000473109 362 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 THAP6-212ENST00000508105 1103 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC109466.1-202ENST00000523648 748 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC137627.1-201ENST00000545761 289 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 HSPE1P2-201ENST00000554777 306 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 DHFRP1-201ENST00000579682 559 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC107993.1-201ENST00000591343 684 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC015982.1-201ENST00000608113 465 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC007786.3-201ENST00000615154 596 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
SKA3Q8IX90 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 MIR193BHG-214ENST00000641765 509 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 CASC19-248ENST00000641674 1356 ntBASIC4.98□□□□□ -1.61
SKA3Q8IX90 TMEM161B-211ENST00000512429 1796 ntTSL 2 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 NXT2-201ENST00000218004 2692 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
SKA3Q8IX90 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.98□□□□□ -1.61
SKA3Q8IX90 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 PCAT14-202ENST00000627127 3935 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 KRTAP29-1-201ENST00000391353 1026 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 RMRPP5-201ENST00000411156 267 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC096921.1-201ENST00000411661 375 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 NENFP1-201ENST00000419476 466 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 PQLC2L-202ENST00000426338 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 BX119321.1-201ENST00000428912 797 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 NFYAP1-201ENST00000431953 972 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 LINC02528-202ENST00000434437 535 ntTSL 2 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 TCEA1P3-201ENST00000443005 880 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 MTCO3P17-201ENST00000443775 513 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC073109.1-201ENST00000445066 978 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 AL009050.1-201ENST00000445278 426 ntTSL 3 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 OR7E157P-201ENST00000494376 911 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 RNU6-615P-201ENST00000516065 106 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC022826.1-201ENST00000519383 805 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 MRPS16P1-201ENST00000523462 412 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 SLC48A1-205ENST00000547002 751 ntTSL 3 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 LINC02406-201ENST00000553029 546 ntTSL 3 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 PWRN1-207ENST00000565893 818 ntTSL 3 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC009097.1-201ENST00000567077 406 ntTSL 3 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 CASC22-201ENST00000569713 386 ntTSL 5 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 LINC01620-204ENST00000623295 700 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 AL390318.1-201ENST00000624564 687 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 ZNF253-205ENST00000640599 1208 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 ZNF701-202ENST00000391785 2634 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 PWAR1-201ENST00000624188 2414 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SKA3Q8IX90 OR5AQ1P-202ENST00000641257 1534 ntBASIC4.97□□□□□ -1.61
SKA3Q8IX90 NOVA1-213ENST00000574031 1431 ntTSL 2 BASIC4.97□□□□□ -1.61
SKA3Q8IX90 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.96□□□□□ -1.61
SKA3Q8IX90 PLCB1-211ENST00000617005 6458 ntTSL 5 BASIC4.96□□□□□ -1.61
SKA3Q8IX90 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC4.96□□□□□ -1.61
SKA3Q8IX90 ZNF33A-201ENST00000307441 6196 ntAPPRIS ALT2 TSL 4 BASIC4.96□□□□□ -1.61
SKA3Q8IX90 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
SKA3Q8IX90 CYP7A1-201ENST00000301645 2950 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.61
SKA3Q8IX90 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC4.96□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms