Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AL355834.1-201ENST00000556602 3965 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AQP9-202ENST00000536493 2803 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 ST13P16-201ENST00000401760 781 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC004882.2-201ENST00000420180 244 ntTSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC103563.5-201ENST00000455643 364 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC108751.3-201ENST00000461814 1020 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 THOC7-AS1-201ENST00000468961 673 ntTSL 2 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 PCNAP1-201ENST00000505363 709 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 RGS6-215ENST00000554782 1110 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AL121839.1-201ENST00000556233 1185 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC015802.2-201ENST00000589690 189 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 CT45A1-201ENST00000594117 1087 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 FKBP1AP1-201ENST00000594588 318 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 FAM27E4-201ENST00000605259 342 ntBASIC5.74□□□□□ -1.49
COL28A1Q2UY09 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 ZNF735-201ENST00000429565 1570 ntAPPRIS P1 TSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 DSC1-201ENST00000257197 4271 ntAPPRIS ALT1 TSL 1 (best) BASIC5.74□□□□□ -1.49
COL28A1Q2UY09 IGIP-201ENST00000333305 3458 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 PIP5K1B-201ENST00000265382 2654 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC005480.1-202ENST00000555916 3548 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 NDST4-204ENST00000613194 3439 ntTSL 5 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC087516.1-201ENST00000561236 2428 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 CYBB-201ENST00000378588 4324 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 CLIP4-202ENST00000401605 2322 ntTSL 2 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 KLRF1-201ENST00000279545 1091 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 MIR433-201ENST00000384837 93 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 RAB28P1-201ENST00000411517 641 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC099566.1-204ENST00000413825 943 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC107057.1-201ENST00000425763 319 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AL139148.1-201ENST00000427122 680 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 RPL17P35-201ENST00000432217 549 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AL138787.1-202ENST00000437804 898 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC074367.1-201ENST00000438685 1125 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 Z80107.2-201ENST00000445127 392 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 MORF4-201ENST00000447135 971 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC009220.1-201ENST00000451614 275 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AZGP1P2-201ENST00000454506 345 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 GYG1P1-201ENST00000460864 698 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 SLC25A51P1-201ENST00000468432 871 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 RPL23AP82-206ENST00000480246 2987 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 VPS26A-206ENST00000489794 928 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 GOLGA5P1-201ENST00000507317 980 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 LINC02196-201ENST00000512838 568 ntTSL 4 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 Y_RNA.710-201ENST00000516975 110 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 MINCR-206ENST00000524335 499 ntTSL 2 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC090079.2-201ENST00000575289 768 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC005702.2-201ENST00000591035 481 ntAPPRIS P1 TSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 HMGB1P51-201ENST00000605166 638 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC024589.2-201ENST00000605642 1294 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC100827.5-201ENST00000615883 426 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 KLRF1-208ENST00000617889 1241 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC068870.2-201ENST00000620635 389 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AP001784.1-201ENST00000624107 428 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC092375.1-202ENST00000639452 404 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 MTO1-212ENST00000498286 10857 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 NLGN1-202ENST00000401917 1827 ntTSL 5 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AC012078.1-201ENST00000405035 1646 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.73□□□□□ -1.49
COL28A1Q2UY09 AL161756.3-201ENST00000641216 2071 ntBASIC5.73□□□□□ -1.49
COL28A1Q2UY09 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 AADAT-202ENST00000353187 2101 ntAPPRIS P3 TSL 2 BASIC5.72□□□□□ -1.49
COL28A1Q2UY09 TRRAP-204ENST00000446306 12492 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms