Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 NANOGNBP2-201ENST00000544753 553 ntBASIC5.19□□□□□ -1.58
SDC1P18827 MIR4307HG-201ENST00000548170 822 ntTSL 3 BASIC5.19□□□□□ -1.58
SDC1P18827 AL132800.1-201ENST00000555109 698 ntTSL 5 BASIC5.19□□□□□ -1.58
SDC1P18827 AC012616.1-201ENST00000600294 197 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AL499605.1-201ENST00000604628 403 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.19□□□□□ -1.58
SDC1P18827 AC244107.2-201ENST00000611773 76 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AP005212.4-201ENST00000614206 710 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AL118522.2-201ENST00000616045 615 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AC026367.3-201ENST00000619032 590 ntBASIC5.19□□□□□ -1.58
SDC1P18827 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.19□□□□□ -1.58
SDC1P18827 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.19□□□□□ -1.58
SDC1P18827 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 OR1A1-203ENST00000641732 3832 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SDC1P18827 WAC-209ENST00000428935 1320 ntTSL 2 BASIC5.19□□□□□ -1.58
SDC1P18827 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SDC1P18827 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 CASC19-255ENST00000641733 1385 ntBASIC5.18□□□□□ -1.58
SDC1P18827 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SDC1P18827 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 FHIT-201ENST00000341848 174 ntTSL 3 BASIC5.18□□□□□ -1.58
SDC1P18827 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 PPCS-201ENST00000372556 984 ntTSL 2 BASIC5.18□□□□□ -1.58
SDC1P18827 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.18□□□□□ -1.58
SDC1P18827 AC017019.1-201ENST00000426129 261 ntBASIC5.18□□□□□ -1.58
SDC1P18827 LINC01363-202ENST00000428030 930 ntTSL 3 BASIC5.18□□□□□ -1.58
SDC1P18827 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.18□□□□□ -1.58
SDC1P18827 AC016772.1-201ENST00000444170 1261 ntBASIC5.18□□□□□ -1.58
SDC1P18827 AL035090.1-201ENST00000454835 332 ntBASIC5.18□□□□□ -1.58
SDC1P18827 AP000797.2-201ENST00000475768 606 ntBASIC5.18□□□□□ -1.58
SDC1P18827 IMPA1P1-201ENST00000510718 842 ntBASIC5.18□□□□□ -1.58
SDC1P18827 NPM1P21-201ENST00000513394 762 ntBASIC5.18□□□□□ -1.58
SDC1P18827 AP000722.1-201ENST00000531176 775 ntTSL 3 BASIC5.18□□□□□ -1.58
SDC1P18827 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SDC1P18827 AP003037.1-201ENST00000537594 267 ntTSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.18□□□□□ -1.58
SDC1P18827 AL050403.2-203ENST00000603180 558 ntTSL 4 BASIC5.18□□□□□ -1.58
SDC1P18827 AC002069.2-201ENST00000603580 883 ntBASIC5.18□□□□□ -1.58
SDC1P18827 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 AL096712.1-201ENST00000614561 159 ntBASIC5.18□□□□□ -1.58
SDC1P18827 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC5.18□□□□□ -1.58
SDC1P18827 AL353796.1-201ENST00000561542 3241 ntBASIC5.18□□□□□ -1.58
SDC1P18827 GVINP1-202ENST00000531871 7271 ntBASIC5.18□□□□□ -1.58
SDC1P18827 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 OR13C1P-202ENST00000641378 2919 ntBASIC5.18□□□□□ -1.58
SDC1P18827 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SDC1P18827 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 PIGA-206ENST00000542278 3626 ntAPPRIS P1 TSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SDC1P18827 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SDC1P18827 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.18□□□□□ -1.58
SDC1P18827 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC5.18□□□□□ -1.58
SDC1P18827 OR5AQ1P-202ENST00000641257 1534 ntBASIC5.18□□□□□ -1.58
SDC1P18827 DAB2-209ENST00000509337 2740 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SDC1P18827 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.17□□□□□ -1.58
SDC1P18827 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
SDC1P18827 TMEM99-201ENST00000301665 2058 ntAPPRIS P2 TSL 2 BASIC5.17□□□□□ -1.58
SDC1P18827 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.17□□□□□ -1.58
SDC1P18827 AC091305.2-201ENST00000624049 1576 ntBASIC5.17□□□□□ -1.58
SDC1P18827 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SDC1P18827 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 KRTAP23-1-201ENST00000334160 211 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SDC1P18827 HMGN1P20-201ENST00000411849 300 ntBASIC5.17□□□□□ -1.58
SDC1P18827 LINC00446-201ENST00000414743 459 ntTSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 AC013268.2-201ENST00000420753 337 ntBASIC5.17□□□□□ -1.58
SDC1P18827 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
SDC1P18827 BX119904.3-201ENST00000428194 957 ntBASIC5.17□□□□□ -1.58
SDC1P18827 HSPD1P12-201ENST00000429127 1069 ntBASIC5.17□□□□□ -1.58
SDC1P18827 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 AC009227.2-201ENST00000432599 511 ntTSL 3 BASIC5.17□□□□□ -1.58
SDC1P18827 RPL19P16-201ENST00000433839 588 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AL121759.1-201ENST00000434043 795 ntTSL 5 BASIC5.17□□□□□ -1.58
SDC1P18827 FMO7P-201ENST00000436045 768 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC5.17□□□□□ -1.58
SDC1P18827 Z84478.1-201ENST00000438230 1219 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC019185.1-201ENST00000442718 389 ntBASIC5.17□□□□□ -1.58
SDC1P18827 AC079117.1-201ENST00000445178 1000 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
SDC1P18827 EEF1B2P6-201ENST00000445713 673 ntBASIC5.17□□□□□ -1.58
SDC1P18827 RNU7-157P-201ENST00000459600 66 ntBASIC5.17□□□□□ -1.58
SDC1P18827 RN7SL72P-201ENST00000460697 269 ntBASIC5.17□□□□□ -1.58
SDC1P18827 PEX5L-AS1-201ENST00000466064 827 ntTSL 2 BASIC5.17□□□□□ -1.58
SDC1P18827 RN7SL649P-201ENST00000496974 275 ntBASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 117.3 ms