Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LRRC37A4P-202ENST00000581296 5372 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 ADD2-201ENST00000264436 9267 ntAPPRIS P4 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 FAT4-201ENST00000335110 9669 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 SHTN1-207ENST00000615301 6730 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 PLEKHA1-201ENST00000368988 3872 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 CTBS-202ENST00000370630 6600 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 AL121886.1-201ENST00000358609 435 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 OR13Z1P-201ENST00000416141 834 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 TMBIM7P-201ENST00000418074 855 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A3P12111 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A3P12111 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A3P12111 LINC01510-203ENST00000458082 626 ntTSL 3 BASIC5.36□□□□□ -1.55
COL6A3P12111 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A3P12111 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 LINC01598-206ENST00000513381 499 ntTSL 4 BASIC5.36□□□□□ -1.55
COL6A3P12111 FAM174B-202ENST00000553393 495 ntTSL 2 BASIC5.36□□□□□ -1.55
COL6A3P12111 AC007346.2-201ENST00000564816 892 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 Metazoa_SRP.55-201ENST00000618452 275 ntBASIC5.36□□□□□ -1.55
COL6A3P12111 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
COL6A3P12111 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC5.36□□□□□ -1.55
COL6A3P12111 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5.36□□□□□ -1.55
COL6A3P12111 UQCC1-208ENST00000397554 3638 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A3P12111 JADE1-203ENST00000452328 5544 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
COL6A3P12111 DMBT1-203ENST00000344338 7656 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 DMBT1-205ENST00000368955 7656 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 SSBP2-201ENST00000320672 8780 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 LINC02466-201ENST00000500092 1963 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 ZNF184-202ENST00000377419 2899 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
COL6A3P12111 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC5.35□□□□□ -1.55
COL6A3P12111 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A3P12111 AC091959.2-201ENST00000477363 321 ntBASIC5.35□□□□□ -1.55
COL6A3P12111 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC5.35□□□□□ -1.55
COL6A3P12111 LINC00649-204ENST00000593977 640 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 LINC02334-201ENST00000617568 4959 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 TAF8-201ENST00000372977 6680 ntAPPRIS P2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.35□□□□□ -1.55
COL6A3P12111 TRPC4-207ENST00000426868 2709 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A3P12111 TP53BP1-210ENST00000450115 6179 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 BRD7-202ENST00000394689 2145 ntAPPRIS ALT1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC5.35□□□□□ -1.55
COL6A3P12111 HSFY6P-201ENST00000445573 403 ntBASIC5.35□□□□□ -1.55
COL6A3P12111 RN7SL423P-201ENST00000486202 304 ntBASIC5.35□□□□□ -1.55
COL6A3P12111 AC091912.1-201ENST00000511351 248 ntBASIC5.35□□□□□ -1.55
COL6A3P12111 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC5.35□□□□□ -1.55
COL6A3P12111 NANOGP3-201ENST00000605855 286 ntBASIC5.35□□□□□ -1.55
COL6A3P12111 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 LINC02341-201ENST00000637043 824 ntTSL 3 BASIC5.35□□□□□ -1.55
COL6A3P12111 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 CBFA2T2-206ENST00000397800 7449 ntTSL 5 BASIC5.35□□□□□ -1.55
COL6A3P12111 FAM197Y8-201ENST00000426661 2340 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A3P12111 FAM197Y6-202ENST00000442145 2340 ntTSL 2 BASIC5.35□□□□□ -1.55
COL6A3P12111 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 POLQ-201ENST00000264233 8775 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
COL6A3P12111 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL6A3P12111 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC5.34□□□□□ -1.55
COL6A3P12111 AL354766.1-201ENST00000423396 542 ntBASIC5.34□□□□□ -1.55
COL6A3P12111 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 LYRM4-208ENST00000500576 592 ntTSL 2 BASIC5.34□□□□□ -1.55
COL6A3P12111 OR5AM1P-201ENST00000532136 1032 ntBASIC5.34□□□□□ -1.55
COL6A3P12111 AL512428.1-201ENST00000562221 654 ntAPPRIS P1 TSL 5 BASIC5.34□□□□□ -1.55
COL6A3P12111 AP005121.1-202ENST00000584414 555 ntTSL 2 BASIC5.34□□□□□ -1.55
COL6A3P12111 MME-203ENST00000460393 5622 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC5.34□□□□□ -1.55
COL6A3P12111 ATP2B4-201ENST00000341360 4658 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A3P12111 EPB41L2-220ENST00000528282 3663 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 UTY-210ENST00000538878 6574 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 ZNF791-202ENST00000446165 6412 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 ZNF229-203ENST00000613197 4835 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 PER3-202ENST00000377532 6279 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 RNF41-201ENST00000345093 5596 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 NRK-204ENST00000540278 1687 ntTSL 2 BASIC5.34□□□□□ -1.55
COL6A3P12111 MTOR-201ENST00000361445 8677 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 C2orf71-201ENST00000331664 7044 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
COL6A3P12111 SMIM21-203ENST00000584508 2554 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL6A3P12111 ADGRL3-209ENST00000508693 5009 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A3P12111 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC5.34□□□□□ -1.55
COL6A3P12111 HIST1H2APS3-201ENST00000403259 134 ntBASIC5.34□□□□□ -1.55
COL6A3P12111 CASC6-201ENST00000437768 733 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 CENPK-210ENST00000510354 1124 ntTSL 5 BASIC5.34□□□□□ -1.55
COL6A3P12111 AC244502.2-201ENST00000543361 851 ntBASIC5.34□□□□□ -1.55
COL6A3P12111 AL035461.2-201ENST00000619201 524 ntBASIC5.34□□□□□ -1.55
COL6A3P12111 MYT1L-202ENST00000399161 7063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 SLC17A8-201ENST00000323346 3983 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
COL6A3P12111 CAST-202ENST00000325674 3356 ntTSL 5 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms