Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 C15orf41-205ENST00000563167 772 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC068313.1-201ENST00000604028 1008 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AC009027.1-201ENST00000604510 479 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 MIR7155-201ENST00000615925 56 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 CCT5-215ENST00000625723 135 ntTSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC7.04□□□□□ -1.28
COL3A1P02461 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC7.04□□□□□ -1.28
COL3A1P02461 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 ATP5S-202ENST00000311459 10212 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 SYT14P1-202ENST00000600441 1448 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
COL3A1P02461 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
COL3A1P02461 OR9G4-201ENST00000302957 984 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 RNA5SP507-201ENST00000363603 121 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 SLC19A3-202ENST00000409287 644 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC7.04□□□□□ -1.28
COL3A1P02461 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 AC093655.2-201ENST00000425735 631 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AC138761.5-201ENST00000433967 325 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AC108161.1-201ENST00000461060 402 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AADACP1-204ENST00000483636 1285 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 HOMER1-204ENST00000508576 815 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 BMPR1APS2-201ENST00000527904 1012 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
COL3A1P02461 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC233699.1-201ENST00000569955 1168 ntBASIC7.04□□□□□ -1.28
COL3A1P02461 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC7.04□□□□□ -1.28
COL3A1P02461 AC072062.1-209ENST00000627336 772 ntTSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 MGAM-202ENST00000475668 9172 ntAPPRIS P1 TSL 5 BASIC7.04□□□□□ -1.28
COL3A1P02461 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 PPP1R2P3-201ENST00000522232 1991 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
COL3A1P02461 AC007159.1-201ENST00000566529 4706 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC7.03□□□□□ -1.28
COL3A1P02461 RASSF9-201ENST00000361228 5682 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL3A1P02461 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 SNURFL-201ENST00000309296 343 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 NUDT19P3-201ENST00000404698 555 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 TEX41-206ENST00000432608 661 ntTSL 3 BASIC7.03□□□□□ -1.28
COL3A1P02461 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC7.03□□□□□ -1.28
COL3A1P02461 AC092647.2-201ENST00000452998 253 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC7.03□□□□□ -1.28
COL3A1P02461 RPL7P41-201ENST00000485823 957 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 RPSAP51-201ENST00000497462 645 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 GLUD1P3-202ENST00000508551 200 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC7.03□□□□□ -1.28
COL3A1P02461 AC006427.1-201ENST00000514359 712 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 AL355432.1-201ENST00000522960 564 ntTSL 3 BASIC7.03□□□□□ -1.28
COL3A1P02461 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC7.03□□□□□ -1.28
COL3A1P02461 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC7.03□□□□□ -1.28
COL3A1P02461 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC7.03□□□□□ -1.28
COL3A1P02461 MIR6839-201ENST00000620425 113 ntBASIC7.03□□□□□ -1.28
COL3A1P02461 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC7.03□□□□□ -1.28
COL3A1P02461 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 CEP295-206ENST00000531700 2890 ntAPPRIS ALT2 TSL 2 BASIC7.03□□□□□ -1.28
COL3A1P02461 TRAPPC6B-201ENST00000330149 3242 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 CLSPN-206ENST00000520551 4010 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 AGO1-201ENST00000373204 13708 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
COL3A1P02461 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC7.02□□□□□ -1.28
COL3A1P02461 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC7.02□□□□□ -1.28
COL3A1P02461 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL3A1P02461 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC7.02□□□□□ -1.29
COL3A1P02461 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC7.02□□□□□ -1.29
COL3A1P02461 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL3A1P02461 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC7.02□□□□□ -1.29
COL3A1P02461 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
COL3A1P02461 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC7.02□□□□□ -1.29
COL3A1P02461 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
COL3A1P02461 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC7.02□□□□□ -1.29
COL3A1P02461 RN7SKP104-201ENST00000362605 328 ntBASIC7.02□□□□□ -1.29
COL3A1P02461 RN7SKP126-201ENST00000411143 300 ntBASIC7.02□□□□□ -1.29
COL3A1P02461 ATP6V1G1P7-201ENST00000415853 349 ntBASIC7.02□□□□□ -1.29
COL3A1P02461 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC7.02□□□□□ -1.29
COL3A1P02461 AC006455.6-201ENST00000426192 893 ntBASIC7.02□□□□□ -1.29
COL3A1P02461 RPS4XP16-201ENST00000427198 791 ntBASIC7.02□□□□□ -1.29
COL3A1P02461 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC7.02□□□□□ -1.29
COL3A1P02461 LINC01133-202ENST00000443364 1266 ntTSL 5 BASIC7.02□□□□□ -1.29
COL3A1P02461 AC079760.2-201ENST00000449361 681 ntTSL 5 BASIC7.02□□□□□ -1.29
COL3A1P02461 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC7.02□□□□□ -1.29
COL3A1P02461 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC7.02□□□□□ -1.29
COL3A1P02461 RN7SL860P-201ENST00000473738 223 ntBASIC7.02□□□□□ -1.29
COL3A1P02461 RN7SL826P-201ENST00000479724 288 ntBASIC7.02□□□□□ -1.29
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms