Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC26.31■■□□□ 1.8
USP54Q70EL1 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP54Q70EL1 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP54Q70EL1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP54Q70EL1 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC26.31■■□□□ 1.8
USP54Q70EL1 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
USP54Q70EL1 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC26.31■■□□□ 1.8
USP54Q70EL1 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC26.31■■□□□ 1.8
USP54Q70EL1 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
USP54Q70EL1 AL160286.2-201ENST00000567150 934 ntBASIC26.31■■□□□ 1.8
USP54Q70EL1 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
USP54Q70EL1 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC26.3■■□□□ 1.8
USP54Q70EL1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP54Q70EL1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP54Q70EL1 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC26.3■■□□□ 1.8
USP54Q70EL1 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP54Q70EL1 TSC22D4-202ENST00000393991 1469 ntTSL 2 BASIC26.3■■□□□ 1.8
USP54Q70EL1 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC26.3■■□□□ 1.8
USP54Q70EL1 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC26.3■■□□□ 1.8
USP54Q70EL1 AC130371.2-201ENST00000619443 611 ntBASIC26.3■■□□□ 1.8
USP54Q70EL1 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC26.3■■□□□ 1.8
USP54Q70EL1 FAM212B-203ENST00000444059 1423 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
USP54Q70EL1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC26.3■■□□□ 1.8
USP54Q70EL1 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC26.3■■□□□ 1.8
USP54Q70EL1 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP54Q70EL1 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC26.3■■□□□ 1.8
USP54Q70EL1 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP54Q70EL1 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC26.29■■□□□ 1.8
USP54Q70EL1 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
USP54Q70EL1 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC26.29■■□□□ 1.8
USP54Q70EL1 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC26.29■■□□□ 1.8
USP54Q70EL1 AC083849.1-201ENST00000615227 514 ntBASIC26.29■■□□□ 1.8
USP54Q70EL1 AP005212.1-201ENST00000581547 1997 ntBASIC26.29■■□□□ 1.8
USP54Q70EL1 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
USP54Q70EL1 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC26.29■■□□□ 1.8
USP54Q70EL1 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
USP54Q70EL1 ARMC10P1-201ENST00000313754 855 ntBASIC26.28■■□□□ 1.8
USP54Q70EL1 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC26.28■■□□□ 1.8
USP54Q70EL1 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
USP54Q70EL1 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
USP54Q70EL1 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC26.28■■□□□ 1.8
USP54Q70EL1 ISCU-203ENST00000431221 799 ntTSL 2 BASIC26.28■■□□□ 1.8
USP54Q70EL1 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP54Q70EL1 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP54Q70EL1 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP54Q70EL1 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP54Q70EL1 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC26.27■■□□□ 1.8
USP54Q70EL1 ATP5G1P1-201ENST00000448724 379 ntBASIC26.27■■□□□ 1.8
USP54Q70EL1 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC26.27■■□□□ 1.8
USP54Q70EL1 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC26.27■■□□□ 1.8
USP54Q70EL1 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC26.27■■□□□ 1.8
USP54Q70EL1 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC26.27■■□□□ 1.8
USP54Q70EL1 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP54Q70EL1 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC26.27■■□□□ 1.8
USP54Q70EL1 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP54Q70EL1 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
USP54Q70EL1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC26.27■■□□□ 1.8
USP54Q70EL1 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC26.26■■□□□ 1.8
USP54Q70EL1 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP54Q70EL1 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP54Q70EL1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC26.26■■□□□ 1.79
USP54Q70EL1 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC26.26■■□□□ 1.79
USP54Q70EL1 SQSTM1-216ENST00000626660 274 ntTSL 5 BASIC26.26■■□□□ 1.79
USP54Q70EL1 AC116562.4-202ENST00000641738 218 ntBASIC26.26■■□□□ 1.79
USP54Q70EL1 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
USP54Q70EL1 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
USP54Q70EL1 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP54Q70EL1 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP54Q70EL1 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP54Q70EL1 TSPY17P-201ENST00000450329 467 ntBASIC26.25■■□□□ 1.79
USP54Q70EL1 CKBP1-201ENST00000565489 1086 ntBASIC26.25■■□□□ 1.79
USP54Q70EL1 AC020907.5-201ENST00000624372 1936 ntBASIC26.25■■□□□ 1.79
USP54Q70EL1 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP54Q70EL1 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC26.25■■□□□ 1.79
USP54Q70EL1 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
USP54Q70EL1 SAPCD2P2-201ENST00000431719 1174 ntBASIC26.25■■□□□ 1.79
USP54Q70EL1 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC26.25■■□□□ 1.79
USP54Q70EL1 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC26.25■■□□□ 1.79
USP54Q70EL1 AC141257.4-201ENST00000634557 245 ntBASIC26.25■■□□□ 1.79
USP54Q70EL1 AC136944.6-201ENST00000634818 245 ntBASIC26.25■■□□□ 1.79
USP54Q70EL1 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC26.24■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms